Contact Molecules for Homologous Proteins | ||||
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PID | QueryLength | Homolgous Sequence in PDB | UniProt Query | TITLE |
2908540 | 258 | 14 | O95721(SNP29_HUMAN) | RecName: Full=Synaptosomal-associated protein 29 ; Short=SNAP-29 ;AltName: Full=Soluble 29 kDa NSF attachment protein ;AltName: Full=Vesicle-membrane fusion protein SNAP-29; |
QUERYSEQ |
MSAYPKSYNPFDDDGEDEGARPAPWRDARDLPDGPDAPADRQQYLRQEVLRRAEATAASTSRSLALMYESEKVGVASSEELARQRGVLERTEKMVDKMDQDLKISQKHINSIKSVFGGLVNYFKSKPVETPPEQNGTLTSQPNNRLKEAI STSKEQEAKYQASHPNLRKLDDTDPVPRGAGSAMSTDAYPKNPHLRAYHQKIDSNLDELSMGLGRLKDIALGMQTEIEEQDDILDRLTTKVDKLDVNIKSTERKVRQL |
258 |
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region | name | description |
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1-258 | CHAIN | /note="Synaptosomal-associated protein 29" /id="PRO_0000213601" |
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196-258 | DOMAIN | /note="t-SNARE coiled-coil homology" |
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1-41 | REGION | /note="Disordered" |
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150-191 | REGION | /note="Disordered" |
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76-107 | COILED | |
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10-36 | COMPBIAS | /note="Basic and acidic residues" |
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161-175 | COMPBIAS | /note="Basic and acidic residues" |
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1-258 | DISORDER | predicted by DISOPRED |
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258 | |||||||
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pdb_id | a1 | identity[%]2 | description | |||
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C | 100.0 | SNP29_HUMAN Synaptosomal-associated protein 29 | |||
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H | 100.0 | SNP29_HUMAN Synaptosomal-associated protein 29 | |||
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue. |
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258 | pdb_id | contact mol | homologue | ||||
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a3 | description | a4 | identity[%]5 | Ncon6 | description | |
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A | VAMP8_HUMAN Vesicle-associated membrane protein 8[64 aa] | C | 100.0 /100.0 |
3 /3 |
SNP29_HUMAN Synaptosomal-associated protein 29 |
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A | VAMP8_HUMAN Vesicle-associated membrane protein 8[64 aa] | D | 100.0 /100.0 |
24 /24 |
SNP29_HUMAN Synaptosomal-associated protein 29 |
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A | VAMP8_HUMAN Vesicle-associated membrane protein 8[66 aa] | C | 100.0 /100.0 |
4 /4 |
SNP29_HUMAN Synaptosomal-associated protein 29 |
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B | STX17_HUMAN Syntaxin-17[58 aa] | C | 100.0 /100.0 |
25 /25 |
SNP29_HUMAN Synaptosomal-associated protein 29 |
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B | STX17_HUMAN Syntaxin-17[58 aa] | D | 100.0 /100.0 |
5 /5 |
SNP29_HUMAN Synaptosomal-associated protein 29 |
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B | STX17_HUMAN Syntaxin-17[61 aa] | D | 100.0 /100.0 |
5 /5 |
SNP29_HUMAN Synaptosomal-associated protein 29 |
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D | SNP29_HUMAN Synaptosomal-associated protein 29[65 aa] | C | 100.0 /100.0 |
28 /28 |
SNP29_HUMAN Synaptosomal-associated protein 29 |
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C | SNP29_HUMAN Synaptosomal-associated protein 29[78 aa] | D | 100.0 /100.0 |
27 /27 |
SNP29_HUMAN Synaptosomal-associated protein 29 |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. |