Contact Molecules for Homologous Proteins

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PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
1682730 498 2 Q13568(IRF5_HUMAN) RecName: Full=Interferon regulatory factor 5 ; Short=IRF-5 ;
QUERYSEQ 
MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNGPAPTDSQPPEDYSFGAGEEEEEEEEL
QRMLPSLSLTEDVKWPPTLQPPTLRPPTLQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDLLISPHMLPLTDLEIKFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFP
SPEDIPSDKQRFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPNPIQREVKTKLFSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEMFSGELSWSADSIRLQISNPDL
KDRMVEQFKELHHIWQSQQRLQPVAQAPPGAGLGVGQGPWPMHPAGMQ
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [Q13568(IRF5_HUMAN)]

498
region name description
1-498 CHAIN /note="Interferon regulatory factor 5" /id="PRO_0000154558"
14-122 DNA_BIND /note="IRF tryptophan pentad repeat"
121-207 REGION /note="Disordered"
478-498 REGION /note="Disordered"
169-206 COMPBIAS /note="Pro residues"
1-498 DISORDER predicted by DISOPRED

MONOMER
498
pdb_id a1 identity[%]2 description
3dsh A 99.6 IRF5_HUMAN Interferon regulatory factor 5
8hcl F 51.5 A8E5I1_DANRE Interferon regulatory factor 10 
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue.
NUCLEOTIDE
498 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
8hcl[1] C DNA (5'-D(P*AP*CP*TP*TP*TP*CP*AP*CP*TP*TP*CP*A)-3'.. F 66.7
/51.5		 12
/12		 A8E5I1_DANRE Interferon regulatory factor 10
8hcl[1] D DNA (5'-D(P*TP*GP*AP*AP*GP*TP*GP*AP*AP*AP*GP*T)-3'.. F 75.0
/51.5		 12
/12		 A8E5I1_DANRE Interferon regulatory factor 10
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
HOMO
498 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
3dsh[2] A IRF5_HUMAN Interferon regulatory factor 5[236 aa] A 98.4
/99.6		 62
/62		 IRF5_HUMAN Interferon regulatory factor 5
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.