#WARNING:no index is registered index "YP_009725301.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725301.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
Modeling a 3D structure on 8sk4_A_1_A_2_B_1_B_2_C_1_C_2 by the Modeller program
Modeling a 3D structure on 8sk4_A_1_A_2_B_1_B_2_C_1_C_2 by the Modeller program
(TEMPLATE: 8sk4)
assembly_id:1)
If you install the Modeller program in your computer, you can model a full-atom 3D structure of the complex using following files.
Modeller scripts for complex
- Download modeller python script: model_complex.py
- Download alignment file: alignment_complex.ali
- Download template PDB file: 8sk4.pdb
- execute command:
mod10 model_complex.py
Modeller scripts for each subunit
Subunit 1
- Download modeller script: model1.py
- Download alignment: alignment1.ali
- Download template PDB file: 8sk4_A_1.pdb
- execute command:
mod10 model1.py
Subunit 2
- Download template PDB file: 8sk4_A_2.pdb
Subunit 3
- Download template PDB file: 8sk4_B_1.pdb
Subunit 4
- Download template PDB file: 8sk4_B_2.pdb
Subunit 5
- Download template PDB file: 8sk4_C_1.pdb
Subunit 6
- Download template PDB file: 8sk4_C_2.pdb
Merge all the subunit models
- execute command:
cat query1.B99990001.pdb 8sk4_A_2.pdb 8sk4_B_1.pdb 8sk4_B_2.pdb 8sk4_C_1.pdb 8sk4_C_2.pdb > model.pdb