#WARNING:no index is registered index "YP_009725301.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725301.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
Modeling a 3D structure on 8cyu_A_1_B_1_E_1_F_1 by the Modeller program
Modeling a 3D structure on 8cyu_A_1_B_1_E_1_F_1 by the Modeller program
(TEMPLATE: 8cyu)
assembly_id:1)
If you install the Modeller program in your computer, you can model a full-atom 3D structure of the complex using following files.
Modeller scripts for complex
- Download modeller python script: model_complex.py
- Download alignment file: alignment_complex.ali
- Download template PDB file: 8cyu.pdb
- execute command:
mod10 model_complex.py
Modeller scripts for each subunit
Subunit 1
- Download template PDB file: 8cyu_A_1.pdb
Subunit 2
- Download modeller script: model2.py
- Download alignment: alignment2.ali
- Download template PDB file: 8cyu_B_1.pdb
- execute command:
mod10 model2.py
Subunit 3
- Download template PDB file: 8cyu_E_1.pdb
Subunit 4
- Download template PDB file: 8cyu_F_1.pdb
Merge all the subunit models
- execute command:
cat 8cyu_A_1.pdb query2.B99990001.pdb 8cyu_E_1.pdb 8cyu_F_1.pdb > model.pdb