Modeling a 3D structure on 8alk_A_1_B_1_C_1_D_1_E_1_F_1_G_1_H_1 by the Modeller program (TEMPLATE: 8alk) assembly_id:1)

Modeller scripts for complex

1. Download modeller python script: model_complex.py

2. Download alignment file: alignment_complex.ali

3. Download template PDB file: 8alk.pdb

4. execute command:

   mod10 model_complex.py

Modeller scripts for each subunit

Subunit 1

1. Download template PDB file: 8alk_A_1.pdb

   Subunit 2

2. Download modeller script: model2.py

3. Download alignment: alignment2.ali

4. Download template PDB file: 8alk_B_1.pdb

5. execute command:

   mod10 model2.py

   Subunit 3

6. Download template PDB file: 8alk_C_1.pdb

   Subunit 4

7. Download template PDB file: 8alk_D_1.pdb

   Subunit 5

8. Download template PDB file: 8alk_E_1.pdb

   Subunit 6

9. Download template PDB file: 8alk_F_1.pdb

   Subunit 7

10. Download template PDB file: 8alk_G_1.pdb

    Subunit 8

11. Download template PDB file: 8alk_H_1.pdb

    Merge all the subunit models

12. execute command:

    cat 8alk_A_1.pdb query2.B99990001.pdb 8alk_C_1.pdb 8alk_D_1.pdb 8alk_E_1.pdb 8alk_F_1.pdb 8alk_G_1.pdb 8alk_H_1.pdb > model.pdb