#WARNING:no index is registered index "YP_009725301.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725301.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
Modeling a 3D structure on 7gnm_A_1_B_1_C_1_D_1_E_1_F_1_G_1_H_1_I_1_J_1_K_1_L_1_M_1_N_1_O_1_P_1_Q_1_R_1_S_1_T_1_U_1 by the Modeller program
Modeling a 3D structure on 7gnm_A_1_B_1_C_1_D_1_E_1_F_1_G_1_H_1_I_1_J_1_K_1_L_1_M_1_N_1_O_1_P_1_Q_1_R_1_S_1_T_1_U_1 by the Modeller program
(TEMPLATE: 7gnm)
assembly_id:1)
If you install the Modeller program in your computer, you can model a full-atom 3D structure of the complex using following files.
Modeller scripts for complex
- Download modeller python script: model_complex.py
- Download alignment file: alignment_complex.ali
- Download template PDB file: 7gnm.pdb
- execute command:
mod10 model_complex.py
Modeller scripts for each subunit
Subunit 1
- Download modeller script: model1.py
- Download alignment: alignment1.ali
- Download template PDB file: 7gnm_A_1.pdb
- execute command:
mod10 model1.py
Subunit 2
- Download template PDB file: 7gnm_B_1.pdb
Subunit 3
- Download template PDB file: 7gnm_C_1.pdb
Subunit 4
- Download template PDB file: 7gnm_D_1.pdb
Subunit 5
- Download template PDB file: 7gnm_E_1.pdb
Subunit 6
- Download template PDB file: 7gnm_F_1.pdb
Subunit 7
- Download template PDB file: 7gnm_G_1.pdb
Subunit 8
- Download template PDB file: 7gnm_H_1.pdb
Subunit 9
- Download template PDB file: 7gnm_I_1.pdb
Subunit 10
- Download template PDB file: 7gnm_J_1.pdb
Subunit 11
- Download template PDB file: 7gnm_K_1.pdb
Subunit 12
- Download template PDB file: 7gnm_L_1.pdb
Subunit 13
- Download template PDB file: 7gnm_M_1.pdb
Subunit 14
- Download template PDB file: 7gnm_N_1.pdb
Subunit 15
- Download template PDB file: 7gnm_O_1.pdb
Subunit 16
- Download template PDB file: 7gnm_P_1.pdb
Subunit 17
- Download template PDB file: 7gnm_Q_1.pdb
Subunit 18
- Download template PDB file: 7gnm_R_1.pdb
Subunit 19
- Download template PDB file: 7gnm_S_1.pdb
Subunit 20
- Download template PDB file: 7gnm_T_1.pdb
Subunit 21
- Download template PDB file: 7gnm_U_1.pdb
Merge all the subunit models
- execute command:
cat query1.B99990001.pdb 7gnm_B_1.pdb 7gnm_C_1.pdb 7gnm_D_1.pdb 7gnm_E_1.pdb 7gnm_F_1.pdb 7gnm_G_1.pdb 7gnm_H_1.pdb 7gnm_I_1.pdb 7gnm_J_1.pdb 7gnm_K_1.pdb 7gnm_L_1.pdb 7gnm_M_1.pdb 7gnm_N_1.pdb 7gnm_O_1.pdb 7gnm_P_1.pdb 7gnm_Q_1.pdb 7gnm_R_1.pdb 7gnm_S_1.pdb 7gnm_T_1.pdb 7gnm_U_1.pdb > model.pdb