#WARNING:no index is registered index "YP_009725301.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725301.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. Modeling a 3D structure on 7gmc_A_1_B_1_C_1_D_1_E_1_F_1_G_1_H_1_I_1_J_1_K_1_L_1_M_1 by the Modeller program

Modeling a 3D structure on 7gmc_A_1_B_1_C_1_D_1_E_1_F_1_G_1_H_1_I_1_J_1_K_1_L_1_M_1 by the Modeller program (TEMPLATE: 7gmc) assembly_id:1)

If you install the Modeller program in your computer, you can model a full-atom 3D structure of the complex using following files.

Modeller scripts for complex

  1. Download modeller python script: model_complex.py

  2. Download alignment file: alignment_complex.ali

  3. Download template PDB file: 7gmc.pdb

  4. execute command:

    mod10 model_complex.py

Modeller scripts for each subunit

    Subunit 1

  1. Download modeller script: model1.py

  2. Download alignment: alignment1.ali

  3. Download template PDB file: 7gmc_A_1.pdb

  4. execute command:

    mod10 model1.py

    Subunit 2

  5. Download template PDB file: 7gmc_B_1.pdb

    Subunit 3

  6. Download template PDB file: 7gmc_C_1.pdb

    Subunit 4

  7. Download template PDB file: 7gmc_D_1.pdb

    Subunit 5

  8. Download template PDB file: 7gmc_E_1.pdb

    Subunit 6

  9. Download template PDB file: 7gmc_F_1.pdb

    Subunit 7

  10. Download template PDB file: 7gmc_G_1.pdb

    Subunit 8

  11. Download template PDB file: 7gmc_H_1.pdb

    Subunit 9

  12. Download template PDB file: 7gmc_I_1.pdb

    Subunit 10

  13. Download template PDB file: 7gmc_J_1.pdb

    Subunit 11

  14. Download template PDB file: 7gmc_K_1.pdb

    Subunit 12

  15. Download template PDB file: 7gmc_L_1.pdb

    Subunit 13

  16. Download template PDB file: 7gmc_M_1.pdb

    Merge all the subunit models

  17. execute command:

    cat query1.B99990001.pdb 7gmc_B_1.pdb 7gmc_C_1.pdb 7gmc_D_1.pdb 7gmc_E_1.pdb 7gmc_F_1.pdb 7gmc_G_1.pdb 7gmc_H_1.pdb 7gmc_I_1.pdb 7gmc_J_1.pdb 7gmc_K_1.pdb 7gmc_L_1.pdb 7gmc_M_1.pdb > model.pdb

Alignment for protein A:local for query, global for template[=>global both for query and template]