#WARNING:no index is registered index "YP_009725301.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725301.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. Modeling a 3D structure on 7gko_B_1_M_1 by the Modeller program

Modeling a 3D structure on 7gko_B_1_M_1 by the Modeller program (TEMPLATE: 7gko)

If you install the Modeller program in your computer, you can model a full-atom 3D structure of the complex using following files.

Modeller scripts for complex

  1. Download modeller python script: model_complex.py

  2. Download alignment file: alignment_complex.ali

  3. Download template PDB file: 7gko.pdb

  4. execute command:

    mod10 model_complex.py

Modeller scripts for each subunit

    Subunit 1

  1. Download modeller script: model1.py

  2. Download alignment: alignment1.ali

  3. Download template PDB file: 7gko_B_1.pdb

  4. execute command:

    mod10 model1.py

    Subunit 2

  5. Download template PDB file: 7gko_M_1.pdb

    Merge all the subunit models

  6. execute command:

    cat query1.B99990001.pdb 7gko_M_1.pdb > model.pdb

Alignment for protein A:local for query, global for template[=>global both for query and template]