Modeling a 3D structure on 5jg8_A_1_B_1_C_1_D_1_E_1_F_1_G_1_H_1_I_1_J_1_K_1_L_1_M_1_N_1_O_1_P_1_Q_1_R_1_S_1_T_1 by the Modeller program (TEMPLATE: 5jg8) assembly_id:1)

Modeller scripts for complex

1. Download modeller python script: model_complex.py

2. Download alignment file: alignment_complex.ali

3. Download template PDB file: 5jg8.pdb

4. execute command:

   mod10 model_complex.py

Modeller scripts for each subunit

Subunit 1

1. Download template PDB file: 5jg8_A_1.pdb

   Subunit 2

2. Download modeller script: model2.py

3. Download alignment: alignment2.ali

4. Download template PDB file: 5jg8_B_1.pdb

5. execute command:

   mod10 model2.py

   Subunit 3

6. Download template PDB file: 5jg8_C_1.pdb

   Subunit 4

7. Download template PDB file: 5jg8_D_1.pdb

   Subunit 5

8. Download template PDB file: 5jg8_E_1.pdb

   Subunit 6

9. Download template PDB file: 5jg8_F_1.pdb

   Subunit 7

10. Download template PDB file: 5jg8_G_1.pdb

    Subunit 8

11. Download template PDB file: 5jg8_H_1.pdb

    Subunit 9

12. Download template PDB file: 5jg8_I_1.pdb

    Subunit 10

13. Download template PDB file: 5jg8_J_1.pdb

    Subunit 11

14. Download template PDB file: 5jg8_K_1.pdb

    Subunit 12

15. Download template PDB file: 5jg8_L_1.pdb

    Subunit 13

16. Download template PDB file: 5jg8_M_1.pdb

    Subunit 14

17. Download template PDB file: 5jg8_N_1.pdb

    Subunit 15

18. Download template PDB file: 5jg8_O_1.pdb

    Subunit 16

19. Download template PDB file: 5jg8_P_1.pdb

    Subunit 17

20. Download template PDB file: 5jg8_Q_1.pdb

    Subunit 18

21. Download template PDB file: 5jg8_R_1.pdb

    Subunit 19

22. Download template PDB file: 5jg8_S_1.pdb

    Subunit 20

23. Download template PDB file: 5jg8_T_1.pdb

    Merge all the subunit models

24. execute command:

    cat 5jg8_A_1.pdb query2.B99990001.pdb 5jg8_C_1.pdb 5jg8_D_1.pdb 5jg8_E_1.pdb 5jg8_F_1.pdb 5jg8_G_1.pdb 5jg8_H_1.pdb 5jg8_I_1.pdb 5jg8_J_1.pdb 5jg8_K_1.pdb 5jg8_L_1.pdb 5jg8_M_1.pdb 5jg8_N_1.pdb 5jg8_O_1.pdb 5jg8_P_1.pdb 5jg8_Q_1.pdb 5jg8_R_1.pdb 5jg8_S_1.pdb 5jg8_T_1.pdb > model.pdb