Modeling a 3D structure on 4phg_A_1_B_1_C_1_D_1_E_1_F_1 by the Modeller program (TEMPLATE: 4phg) assembly_id:1)

Modeller scripts for complex

1. Download modeller python script: model_complex.py

2. Download alignment file: alignment_complex.ali

3. Download template PDB file: 4phg.pdb

4. execute command:

   mod10 model_complex.py

Modeller scripts for each subunit

Subunit 1

1. Download modeller script: model1.py

2. Download alignment: alignment1.ali

3. Download template PDB file: 4phg_A_1.pdb

4. execute command:

   mod10 model1.py

   Subunit 2

5. Download template PDB file: 4phg_B_1.pdb

   Subunit 3

6. Download template PDB file: 4phg_C_1.pdb

   Subunit 4

7. Download template PDB file: 4phg_D_1.pdb

   Subunit 5

8. Download template PDB file: 4phg_E_1.pdb

   Subunit 6

9. Download template PDB file: 4phg_F_1.pdb

   Merge all the subunit models

10. execute command:

    cat query1.B99990001.pdb 4phg_B_1.pdb 4phg_C_1.pdb 4phg_D_1.pdb 4phg_E_1.pdb 4phg_F_1.pdb > model.pdb