Modeling a 3D structure on 3dz8_A_1_A_2_B_1_B_2_C_1_C_2_D_1_D_2_E_1_E_2_F_1_F_2_G_1_G_2_H_1_H_2 by the Modeller program (TEMPLATE: 3dz8) assembly_id:1)

Modeller scripts for complex

1. Download modeller python script: model_complex.py

2. Download alignment file: alignment_complex.ali

3. Download template PDB file: 3dz8.pdb

4. execute command:

   mod10 model_complex.py

Modeller scripts for each subunit

Subunit 1

1. Download modeller script: model1.py

2. Download alignment: alignment1.ali

3. Download template PDB file: 3dz8_A_1.pdb

4. execute command:

   mod10 model1.py

   Subunit 2

5. Download template PDB file: 3dz8_A_2.pdb

   Subunit 3

6. Download template PDB file: 3dz8_B_1.pdb

   Subunit 4

7. Download template PDB file: 3dz8_B_2.pdb

   Subunit 5

8. Download template PDB file: 3dz8_C_1.pdb

   Subunit 6

9. Download template PDB file: 3dz8_C_2.pdb

   Subunit 7

10. Download template PDB file: 3dz8_D_1.pdb

    Subunit 8

11. Download template PDB file: 3dz8_D_2.pdb

    Subunit 9

12. Download template PDB file: 3dz8_E_1.pdb

    Subunit 10

13. Download template PDB file: 3dz8_E_2.pdb

    Subunit 11

14. Download template PDB file: 3dz8_F_1.pdb

    Subunit 12

15. Download template PDB file: 3dz8_F_2.pdb

    Subunit 13

16. Download template PDB file: 3dz8_G_1.pdb

    Subunit 14

17. Download template PDB file: 3dz8_G_2.pdb

    Subunit 15

18. Download template PDB file: 3dz8_H_1.pdb

    Subunit 16

19. Download template PDB file: 3dz8_H_2.pdb

    Merge all the subunit models

20. execute command:

    cat query1.B99990001.pdb 3dz8_A_2.pdb 3dz8_B_1.pdb 3dz8_B_2.pdb 3dz8_C_1.pdb 3dz8_C_2.pdb 3dz8_D_1.pdb 3dz8_D_2.pdb 3dz8_E_1.pdb 3dz8_E_2.pdb 3dz8_F_1.pdb 3dz8_F_2.pdb 3dz8_G_1.pdb 3dz8_G_2.pdb 3dz8_H_1.pdb 3dz8_H_2.pdb > model.pdb