Modeling a 3D structure on 3cue_A_1_B_1_C_1_D_1_E_1_F_1_Y_1 by the Modeller program (TEMPLATE: 3cue) assembly_id:1)

Modeller scripts for complex

1. Download modeller python script: model_complex.py

2. Download alignment file: alignment_complex.ali

3. Download template PDB file: 3cue.pdb

4. execute command:

   mod10 model_complex.py

Modeller scripts for each subunit

Subunit 1

1. Download template PDB file: 3cue_A_1.pdb

   Subunit 2

2. Download template PDB file: 3cue_B_1.pdb

   Subunit 3

3. Download template PDB file: 3cue_C_1.pdb

   Subunit 4

4. Download template PDB file: 3cue_D_1.pdb

   Subunit 5

5. Download template PDB file: 3cue_E_1.pdb

   Subunit 6

6. Download modeller script: model6.py

7. Download alignment: alignment6.ali

8. Download template PDB file: 3cue_F_1.pdb

9. execute command:

   mod10 model6.py

   Subunit 7

10. Download template PDB file: 3cue_Y_1.pdb

    Merge all the subunit models

11. execute command:

    cat 3cue_A_1.pdb 3cue_B_1.pdb 3cue_C_1.pdb 3cue_D_1.pdb 3cue_E_1.pdb query6.B99990001.pdb 3cue_Y_1.pdb > model.pdb