Modeling a 3D structure on 2y8e_B_1_F_1_G_1_H_1_I_1 by the Modeller program (TEMPLATE: 2y8e) assembly_id:2)

Modeller scripts for complex

1. Download modeller python script: model_complex.py

2. Download alignment file: alignment_complex.ali

3. Download template PDB file: 2y8e.pdb

4. execute command:

   mod10 model_complex.py

Modeller scripts for each subunit

Subunit 1

1. Download modeller script: model1.py

2. Download alignment: alignment1.ali

3. Download template PDB file: 2y8e_B_1.pdb

4. execute command:

   mod10 model1.py

   Subunit 2

5. Download template PDB file: 2y8e_F_1.pdb

   Subunit 3

6. Download template PDB file: 2y8e_G_1.pdb

   Subunit 4

7. Download template PDB file: 2y8e_H_1.pdb

   Subunit 5

8. Download template PDB file: 2y8e_I_1.pdb

   Merge all the subunit models

9. execute command:

   cat query1.B99990001.pdb 2y8e_F_1.pdb 2y8e_G_1.pdb 2y8e_H_1.pdb 2y8e_I_1.pdb > model.pdb