Modeling a 3D structure on 1tu4_A_1_A_2_B_1_B_2_E_1_E_2_F_1_F_2_G_1_G_2_H_1_H_2_I_1_I_2_J_1_J_2_K_1_K_2 by the Modeller program (TEMPLATE: 1tu4) assembly_id:7)

Modeller scripts for complex

1. Download modeller python script: model_complex.py

2. Download alignment file: alignment_complex.ali

3. Download template PDB file: 1tu4.pdb

4. execute command:

   mod10 model_complex.py

Modeller scripts for each subunit

Subunit 1

1. Download template PDB file: 1tu4_A_1.pdb

   Subunit 2

2. Download template PDB file: 1tu4_A_2.pdb

   Subunit 3

3. Download modeller script: model3.py

4. Download alignment: alignment3.ali

5. Download template PDB file: 1tu4_B_1.pdb

6. execute command:

   mod10 model3.py

   Subunit 4

7. Download template PDB file: 1tu4_B_2.pdb

   Subunit 5

8. Download template PDB file: 1tu4_E_1.pdb

   Subunit 6

9. Download template PDB file: 1tu4_E_2.pdb

   Subunit 7

10. Download template PDB file: 1tu4_F_1.pdb

    Subunit 8

11. Download template PDB file: 1tu4_F_2.pdb

    Subunit 9

12. Download template PDB file: 1tu4_G_1.pdb

    Subunit 10

13. Download template PDB file: 1tu4_G_2.pdb

    Subunit 11

14. Download template PDB file: 1tu4_H_1.pdb

    Subunit 12

15. Download template PDB file: 1tu4_H_2.pdb

    Subunit 13

16. Download template PDB file: 1tu4_I_1.pdb

    Subunit 14

17. Download template PDB file: 1tu4_I_2.pdb

    Subunit 15

18. Download template PDB file: 1tu4_J_1.pdb

    Subunit 16

19. Download template PDB file: 1tu4_J_2.pdb

    Subunit 17

20. Download template PDB file: 1tu4_K_1.pdb

    Subunit 18

21. Download template PDB file: 1tu4_K_2.pdb

    Merge all the subunit models

22. execute command:

    cat 1tu4_A_1.pdb 1tu4_A_2.pdb query3.B99990001.pdb 1tu4_B_2.pdb 1tu4_E_1.pdb 1tu4_E_2.pdb 1tu4_F_1.pdb 1tu4_F_2.pdb 1tu4_G_1.pdb 1tu4_G_2.pdb 1tu4_H_1.pdb 1tu4_H_2.pdb 1tu4_I_1.pdb 1tu4_I_2.pdb 1tu4_J_1.pdb 1tu4_J_2.pdb 1tu4_K_1.pdb 1tu4_K_2.pdb > model.pdb