Modeling a 3D structure on 1g16_A_1_B_1_C_1_D_1_E_1_F_1_G_1_H_1_I_1_J_1_K_1_L_1_M_1_N_1_O_1_P_1 by the Modeller program (TEMPLATE: 1g16) assembly_id:1)


If you install the Modeller program in your computer, you can model a full-atom 3D structure of the complex using following files.

Modeller scripts for complex

  1. Download modeller python script: model_complex.py

  2. Download alignment file: alignment_complex.ali

  3. Download template PDB file: 1g16.pdb

  4. execute command:

    mod10 model_complex.py

Modeller scripts for each subunit

    Subunit 1

  1. Download template PDB file: 1g16_A_1.pdb

    Subunit 2

  2. Download template PDB file: 1g16_B_1.pdb

    Subunit 3

  3. Download template PDB file: 1g16_C_1.pdb

    Subunit 4

  4. Download modeller script: model4.py

  5. Download alignment: alignment4.ali

  6. Download template PDB file: 1g16_D_1.pdb

  7. execute command:

    mod10 model4.py

    Subunit 5

  8. Download template PDB file: 1g16_E_1.pdb

    Subunit 6

  9. Download template PDB file: 1g16_F_1.pdb

    Subunit 7

  10. Download template PDB file: 1g16_G_1.pdb

    Subunit 8

  11. Download template PDB file: 1g16_H_1.pdb

    Subunit 9

  12. Download template PDB file: 1g16_I_1.pdb

    Subunit 10

  13. Download template PDB file: 1g16_J_1.pdb

    Subunit 11

  14. Download template PDB file: 1g16_K_1.pdb

    Subunit 12

  15. Download template PDB file: 1g16_L_1.pdb

    Subunit 13

  16. Download template PDB file: 1g16_M_1.pdb

    Subunit 14

  17. Download template PDB file: 1g16_N_1.pdb

    Subunit 15

  18. Download template PDB file: 1g16_O_1.pdb

    Subunit 16

  19. Download template PDB file: 1g16_P_1.pdb

    Merge all the subunit models

  20. execute command:

    cat 1g16_A_1.pdb 1g16_B_1.pdb 1g16_C_1.pdb query4.B99990001.pdb 1g16_E_1.pdb 1g16_F_1.pdb 1g16_G_1.pdb 1g16_H_1.pdb 1g16_I_1.pdb 1g16_J_1.pdb 1g16_K_1.pdb 1g16_L_1.pdb 1g16_M_1.pdb 1g16_N_1.pdb 1g16_O_1.pdb 1g16_P_1.pdb > model.pdb


Alignment for protein A:local for query, global for template[=>global both for query and template]