Protein Model on 8a4a assembly_id=1 (TEMPLATE: 8a4a assembly_id:1 )

CurrentView:JAVA Change to:[HTML5] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description b(query A)
1 a A 1 (A) polymer(polypeptide(L)) [207 aa] Rab15 effector protein :REP15_HUMAN 8L(M) 41I(V) 43A(I) 44D 45F 47T(V) 58T(K) 60Q 62W 69R 70F(Y) 72S(T) 73L(I) 76A 77F(Y) (identity: 40.0 %/37.3 %)
2 b A(RAB7A_HUMAN) B 1 (B) polymer(polypeptide(L)) [172 aa] Ras-related protein Rab-3C :RAB3C_BOVIN
3 c C 1 (B) non-polymer(GNP) PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER 16D(N) 17S 18G(S) 19V 20G 21K 22T 23S 33F 34S(T) 35N(S) 37Y(F) 39A(S) 40T 65A 66G 67Q 125N 126K 128D 129L(M) 155S 156A 157K (identity: 70.8 %/37.3 %)
4 d D 1 (B) non-polymer(MG) MAGNESIUM ION 22T 40T 63D (identity: 100.0 %/37.3 %)
ALIGNMENTS
MODEL[2] Protein A "queryA" TEMPLATE:8a4a_B_1 identity=37.3%
queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
                :  *  * * * *****    *    *      * * **  * *         **********      * ****    *  * *    *     *     :
8a4a_B_1      32:MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWS----: 127
SecStr          :EEEEEEEESTTSSHHHHHHHHHHS          SEEEEEEEEEETTEEEEEEEEEE  SGGGHHHHHHT TT  EEEEEEETT HHHHHTHHHHH----:    
ExpBur          :ebbbbbbbbeebbbeebbebbeeeeeeeeeeebebbeeeeeebeeeeeebebbbbbbbbeeeeeeebbeebeebebbbbbbbbeeeebbebbeebb----:    
Contact         :a       cccccccc         ccc c cca aaa a          a a ad ccc aa aa  aa                              
Contact         :              d                 d                                                                   

queryA       108:IQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA: 170
                : *       *      *** * *  *   * * *           ******  *** * *    :
8a4a_B_1     128:TQIKTYSWDNAQVILVGNKCDMEDERVISTERGQH-LGEQLGFEFFETSAKDNINVKQTFERLV: 190
SecStr          :HHHHHHT S  EEEEEEE TT GGG  S HHHHHH-HHHHHT EEEE BTTTTBSHHHHHHHHH:    
ExpBur          :eebeeebeeebbbbbbbbebeeeeeeebeeeebee-bbeebebebbbbbbeeeeebeebbeebb:    
Contact         :                 cc cc                          ccc                                                 


Input Residue Numbers for Focused Sites

ex) 2,15,123