Protein Model on 7opq assembly_id=1 (TEMPLATE: 7opq assembly_id:1 )

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) A 1 (A) polymer(polypeptide(L)) [212 aa] Synaptotagmin-like protein 2,Ras-related protein Rab-27A :SYTL2_HUMAN:RB27A_HUMAN
2 b B 1 (B) polymer(polypeptide(L)) [204 aa] Synaptotagmin-like protein 2,Ras-related protein Rab-27A :SYTL2_HUMAN:RB27A_HUMAN 68E 69R 71Q(R) 72S 75V(T) 76A 77F 79R 80G(D) 105E(Q) 107L(Q) 108I(M) 109Q(H) 110A 111S(Y) 112P(S) 113R(E) (identity: 41.2 %/40.9 %)
3 c C 1 (A) non-polymer(06D) 1-[(2~{S})-2-(4-methoxyphenyl)pyrrolidin-1-yl]propan-1-one 10K 81A 82D(M) 111S(Y) (identity: 50.0 %/40.9 %)
4 d D 1 (A) non-polymer(GNP) PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER 17S 18G 19V 20G 21K 22T 23S 33F 34S(N) 35N(S) 36Q(K) 37Y(F) 39A(T) 40T 65A 66G 125N 126K 128D 129L 155S 156A 157K(A) (identity: 73.9 %/40.9 %)
5 e E 1 (A) non-polymer(MG) MAGNESIUM ION 22T 40T 63D (identity: 100.0 %/40.9 %)
6 f F 1 (A) non-polymer(GOL) GLYCEROL 127I(S) 128D 155S 158E(N) 160I(T) (identity: 40.0 %/40.9 %)
7 g G 1 (A) non-polymer(GOL) GLYCEROL 128D 129L 130E 131N(D) 132R(Q) (identity: 60.0 %/40.9 %)
8 h H 1 (A) non-polymer(GOL) GLYCEROL 16D 71Q(R) 98T(N) 101S(N) 102W 105E(Q) (identity: 33.3 %/40.9 %)
9 i I 1 (A) non-polymer(GOL) GLYCEROL 22T 23S 26N(Y) 34S(N) 36Q(K) 37Y(F) 38K(I) (identity: 28.6 %/40.9 %)
10 j J 1 (A) non-polymer(GOL) GLYCEROL 72S (identity: 100.0 %/40.9 %)
11 k K 1 (A) non-polymer(GOL) GLYCEROL 107L(Q) 113R(E) 114D(N) 115P 120F(I) 147N(Y) (identity: 16.7 %/40.9 %)
12 l L 1 (B) non-polymer(06D) 1-[(2~{S})-2-(4-methoxyphenyl)pyrrolidin-1-yl]propan-1-one
13 m M 1 (B) non-polymer(GNP) PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
14 n N 1 (B) non-polymer(MG) MAGNESIUM ION
15 o O 1 (B) non-polymer(GOL) GLYCEROL
16 p P 1 (B) non-polymer(GOL) GLYCEROL
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7opq_A_1 identity=40.9%
queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD----------DRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK:  97
                :* *   **********   **   **      * * **  * *                   * ***** *** **  ** * *    * ** *    * :
7opq_A_1      46:LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFL: 145
SecStr          :EEEEEEE STTSSHHHHHHHHHH     S     SEEEEEEEEEE  B SSS B   EEEEEEEEEE  SGGGHHHHHTTGGG SEEEEEEETT HHHHH:    
ExpBur          :bbbbbbbbbeebbbeebbebbbeeeeeeeeeebebbebeeeebebeeeeeeeeeeeebebbbbbbbbbbeeebeeebbebbeebebbbbbbbbeeeebbe:    
Contact         :  c     hddddddd  i      dddddidd                                e dd bb bb  bbb bbcc               
Contact         :              ei          i ii  e                                        hj                         
Contact         :              i                                                                                     

queryA        98:TLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI: 169
                :    *       *    *     *  *** ***   *           *  ********    *  **    :
7opq_A_1     146:NVRNWISQLQMHAYSENPD---IVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEML: 214
SecStr          :THHHHHHHHHHHSSSSS  ---EEEEEE TT GGG  S HHHHHHHHHHHT  EEE  TTT TTHHHHHHHH:    
ExpBur          :ebbebbeebeeebeeeebb---bbbbbbeeeeeeeeebeeeebeebbeeeebebbbbbbeeeeebeebbeeb:    
Contact         :h  hh  b bbbbbbbkk    k    ddfddggg              k       dddf f                                     
Contact         :       h k   c k              fg                         f                                          
Contact         :                              g                                                                     


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