#WARNING:no index is registered index "YP_009725301.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725301.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 7ntq assembly_id=1

Protein Model on 7ntq assembly_id=1 (TEMPLATE: 7ntq assembly_id:1 )

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) A 1 (A) polymer(polypeptide(L)) [305 aa] 3C-like proteinase :R1A_SARS2
2 b A 2 (A) polymer(polypeptide(L)) [305 aa] 3C-like proteinase :R1A_SARS2 1S 2G 3F 4R 5K 6M 7A 8F 9P 10S 11G 14E 118Y 121S 122P 123S 124G 125V 126Y 127Q 137K 138G 139S 140F 141L 166E 170G 172H 280T 283G 285A 286L 290E 299Q 300C 301S 302G 303V 304T 305F (identity: 100.0 %/100.0 %)
3 c B 1 (A) non-polymer(35J) N-(pyridin-3-ylmethyl)thioformamide 27L 41H 140F 141L 142N 143G 144S 145C 163H 164H 165M 166E (identity: 100.0 %/100.0 %)
4 d B 2 (A) non-polymer(35J) N-(pyridin-3-ylmethyl)thioformamide
5 e C 1 (A) non-polymer(NA) SODIUM ION 17M 115L 117C 147S 148V (identity: 100.0 %/100.0 %)
6 f C 2 (A) non-polymer(NA) SODIUM ION
7 g D 1 (A) non-polymer(NA) SODIUM ION 134F 173A 174G 182Y 185F (identity: 100.0 %/100.0 %)
8 h D 2 (A) non-polymer(NA) SODIUM ION
9 i E 1 (A) non-polymer(NA) SODIUM ION 203N 204V 207W 288E 289D 290E 291F (identity: 100.0 %/100.0 %)
10 j E 2 (A) non-polymer(NA) SODIUM ION
11 k F 1 (A) non-polymer(FMT) FORMIC ACID 2G 3F 282L 283G (identity: 100.0 %/100.0 %)
12 l F 2 (A) non-polymer(FMT) FORMIC ACID
13 m G 1 (A) non-polymer(FMT) FORMIC ACID 96P 97K 98T (identity: 100.0 %/100.0 %)
14 n G 2 (A) non-polymer(FMT) FORMIC ACID
15 o H 1 (A) non-polymer(FMT) FORMIC ACID 283G (identity: 100.0 %/100.0 %)
16 p H 2 (A) non-polymer(FMT) FORMIC ACID 286L (identity: 100.0 %/100.0 %)
17 q I 1 (A) non-polymer(FMT) FORMIC ACID 218W 279R (identity: 100.0 %/100.0 %)
18 r I 2 (A) non-polymer(FMT) FORMIC ACID
19 s J 1 (A) non-polymer(FMT) FORMIC ACID 25T 41H 49M (identity: 100.0 %/100.0 %)
20 t J 2 (A) non-polymer(FMT) FORMIC ACID
21 u K 1 (A) non-polymer(FMT) FORMIC ACID 100K 101Y (identity: 100.0 %/100.0 %)
22 v K 2 (A) non-polymer(FMT) FORMIC ACID
23 w L 1 (A) non-polymer(FMT) FORMIC ACID 64H 65N 67L (identity: 100.0 %/100.0 %)
24 x L 2 (A) non-polymer(FMT) FORMIC ACID
25 y M 1 (A) non-polymer(DMS) DIMETHYL SULFOXIDE 74Q 75L 76R (identity: 100.0 %/100.0 %)
26 z M 2 (A) non-polymer(DMS) DIMETHYL SULFOXIDE
27 1 N 1 (A) non-polymer(DMS) DIMETHYL SULFOXIDE 6M 7A 8F 127Q 298R (identity: 100.0 %/100.0 %)
28 2 N 2 (A) non-polymer(DMS) DIMETHYL SULFOXIDE 123S (identity: 100.0 %/100.0 %)
29 3 O 1 (A) non-polymer(DMS) DIMETHYL SULFOXIDE 14E 15G 16C 17M 18V 31W 70A 71G 97K (identity: 100.0 %/100.0 %)
30 4 O 2 (A) non-polymer(DMS) DIMETHYL SULFOXIDE
31 5 P 1 (A) non-polymer(DMS) DIMETHYL SULFOXIDE 101Y 103F (identity: 100.0 %/100.0 %)
32 6 P 2 (A) non-polymer(DMS) DIMETHYL SULFOXIDE
33 7 Q 1 (A) non-polymer(DMS) DIMETHYL SULFOXIDE 56D 59I 60R (identity: 100.0 %/100.0 %)
34 8 Q 2 (A) non-polymer(DMS) DIMETHYL SULFOXIDE
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7ntq_A_1 identity=100.0%
queryA         1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
                :****************************************************************************************************:
7ntq_A_1       1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
SecStr          :          HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGG  HHHHTS  HHHHHHT  GGGEEEEETTEEE EEEEEEETTEEEEEESS  TT  E:    
ExpBur          :eebeeeebebeebeebbbbbbbeeeebbbbbbeeebbbbebbbbeeebbeebebeeebeeeeeeebebebeeeebebeeeebeebbbebebeeebeeebe:    
Contact         :bbbbbbbbbbb  b33e3      s c   3         c       s      7  77   ww w  33  yyy                   mmm u
Contact         : kk  111     3  3                       s                                                       3   

queryA       101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
                :****************************************************************************************************:
7ntq_A_1     101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
SecStr          :EEE    TT EEEEEEEETTEEEEEEEEE  TTS B     TT TT EEEEEETTEEEEEEEEEEE TTS EEEE TTS BSTT  SSSS        B :    
ExpBur          :eeeeebeebebbbbbbbbebeeeeeebbbbbbbebbeeebeeebbbbbbbbbeeebbbbbbbbbbebeeebbbbbbbebebbeebebeeeebeeeeebeb:    
Contact         :u 5           e eb  bbbbbbb      g  bbbbbcccc ee              cccb   b bgg       g  g               
Contact         :5                     2   1            cc                        c                                  

queryA       201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
                :****************************************************************************************************:
7ntq_A_1     201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
SecStr          :HHHHHHHHHHHHHTT  TT  S    HHHHHHHHHHTTB    HHHHHHTHHHHHHHT  HHHHHHHHHHHHHH  TT  BTTBSS      HHHHHHHH:    
ExpBur          :bbbbbbbbbbbbeeeeeebeeeeebeeeebbebbeeeebeebeeeebeebeebbeebebebeebbbbbbbbbeeebeeeebeebeebebbbbbebbeeee:    
Contact         :  ii  i          q                                                            qb kb bb iibi      1bb
Contact         :                                                                                  k  p   i          
Contact         :                                                                                  o                 

queryA       301:SGVTF: 305
                :*****:
7ntq_A_1     301:SGVTF: 305
SecStr          :HT   :    
ExpBur          :eeeee:    
Contact         :bbbbb                                                                                               


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