#WARNING:no index is registered index "YP_009725301.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725301.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 7grx assembly_id=1

Protein Model on 7grx assembly_id=1 (TEMPLATE: 7grx assembly_id:1 )

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description b(query A)
1 a A 1 (A) polymer(polypeptide(L)) [301 aa] 3C-like proteinase nsp5 :R1AB_SARS2 1S 2G 4R 5K 6M 7A 8F 9P 10S 11G 14E 115L 122P 123S 124G 125V 126Y 127Q 137K 138G 139S 140F 141L 166E 170G 172H 283G 285A 286L 290E 299Q 301S 302G 303V 304T 305F 306Q (identity: 100.0 %/100.0 %)
2 b A(queryA) B 1 (B) polymer(polypeptide(L)) [306 aa] 3C-like proteinase nsp5 :R1AB_SARS2
3 c C 1 (A) non-polymer(DMS) DIMETHYL SULFOXIDE 306Q (identity: 100.0 %/100.0 %)
4 d D 1 (A) non-polymer(DMS) DIMETHYL SULFOXIDE 306Q (identity: 100.0 %/100.0 %)
5 e E 1 (A) non-polymer(DMS) DIMETHYL SULFOXIDE 118Y 123S (identity: 100.0 %/100.0 %)
6 f F 1 (A) non-polymer(DMS) DIMETHYL SULFOXIDE 123S (identity: 100.0 %/100.0 %)
7 g G 1 (A) non-polymer(NA) SODIUM ION 306Q (identity: 100.0 %/100.0 %)
8 h H 1 (A) non-polymer(DMS) DIMETHYL SULFOXIDE
9 i I 1 (A) non-polymer(DMS) DIMETHYL SULFOXIDE
10 j J 1 (A) non-polymer(DMS) DIMETHYL SULFOXIDE
11 k K 1 (A) non-polymer(CL) CHLORIDE ION 284S 285A 286L (identity: 100.0 %/100.0 %)
12 l L 1 (B) non-polymer(DMS) DIMETHYL SULFOXIDE 52P 53N 54Y (identity: 100.0 %/100.0 %)
13 m M 1 (B) non-polymer(DMS) DIMETHYL SULFOXIDE 6M 7A 8F 127Q 295D 298R (identity: 100.0 %/100.0 %)
14 n N 1 (B) non-polymer(XZT) 1-(2,4-difluorophenyl)pyrrolidine-2,5-dione 165M 166E 167L 168P 189Q 190T 191A 192Q (identity: 100.0 %/100.0 %)
15 o O 1 (B) non-polymer(DMS) DIMETHYL SULFOXIDE 41H 49M 164H 165M 188R 189Q (identity: 100.0 %/100.0 %)
16 p P 1 (B) non-polymer(NA) SODIUM ION 221N 223F 263D 266A (identity: 100.0 %/100.0 %)
17 q Q 1 (B) non-polymer(CL) CHLORIDE ION 223F 224T (identity: 100.0 %/100.0 %)
18 r R 1 (B) non-polymer(DMS) DIMETHYL SULFOXIDE 140F 141L 142N 144S 145C 163H 165M 166E 172H (identity: 100.0 %/100.0 %)
19 s S 1 (B) non-polymer(DMS) DIMETHYL SULFOXIDE 15G 17M 18V 31W 70A (identity: 100.0 %/100.0 %)
ALIGNMENTS
MODEL[2] Protein A "queryA" TEMPLATE:7grx_B_1 identity=100.0%
queryA         1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
                :****************************************************************************************************:
7grx_B_1       1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
SecStr          :          HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGG  TTGGGS  HHHHHHT  GGGEEEEETTEEE EEEEEEETTEEEEEESS  TT  S:    
ExpBur          :eebeeeebebeebeebbbbbbbeeeebbbbbbeebbbbbebbbbeeebbeebebeebbeeeeeeebebebeeeebebeeeeeeebbbebebeeebeebbe:    
Contact         :aa aaaaaaaa  as ss            s         o       o  lll               s                              
Contact         :     mmm                                                                                            

queryA       101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
                :****************************************************************************************************:
7grx_B_1     101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
SecStr          :EEE    TT EEEEEEEETTEEEEEEEEE  TTS B     TT TT EEEEESSS EEEEEEEEEE TTS EEEE TTS BSSS  SSSS        B :    
ExpBur          :eeeeebeebebbbbbbbeebeeeeeebbbbbbbebbeeebeeebbbbbbbbbeeebbbbbbbbbbebeeebbbbbbbebebbeebebeeeebeeeeebeb:    
Contact         :              a  e   aaaaaa         aaaaar rr                 ronann a a               onnnn        
Contact         :                      e   m            rr                       on     r                o           
Contact         :                      f                                         rr                                  

queryA       201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
                :****************************************************************************************************:
7grx_B_1     201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
SecStr          :HHHHHHHHHHHHHTT  TT  S    HHHHHHHHHHTTB    HHHHHHTHHHHHHHS  HHHHHHHHHHHHHH  TT  BTTBSS      HHHHHHHT:    
ExpBur          :bbbbbbbbbbbbeeeeeebeeeeebeeeebbebbeeeebeebeeeebeebeebeeebebebeebbbbbbebbeeebeeeebeeeeebebbbbbebbeeee:    
Contact         :                    p pq                                      p  p                akaa   a    m  ma 
Contact         :                      q                                                             kk              

queryA       301:SGVTFQ: 306
                :******:
7grx_B_1     301:SGVTFQ: 306
SecStr          :TT    :    
ExpBur          :eeeebe:    
Contact         :aaaaaa                                                                                              
Contact         :     c                                                                                              
Contact         :     d                                                                                              
Contact         :     g                                                                                              


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