Protein Model on 6rir_A_1_C_1 (TEMPLATE: 6rir )

CurrentView:JAVA Change to:[HTML5] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) A 1 (A) polymer(polypeptide(L)) [173 aa] Ras-related protein Rab-8A :RAB8A_HUMAN
2 b C 1 (D) polymer(polypeptide(L)) [32 aa] RILP-like protein 2 :RIPL2_HUMAN 41I 43A(I) 44D 45F 47T(I) 62W 70F 72S(U) 73L(I) 77F(Y) (identity: 50.0 %/41.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6rir_A_1 identity=41.2%
queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
                :* *    ********          *      *** **       *      ******* ***     * ****    ** * *    *     *     :
6rir_A_1      11:LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGLERFRUITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE: 110
SecStr          :EEEEEEE STTSSHHHHHHHHHHS          SEEEEEEEEEETTEEEEEEEEEE  SGGGHHHHHTTTTT SEEEEEEETT HHHHHTHHHHHHHHH:    
ExpBur          :ebebbbbbbeebbbebbbebbeeeeeeeeeeebebbeeeeeebebeeeebebbbbbbbbeeebeeebbeebeebebbbbbbbbbeeebbeebeebbebbe:    
Contact         :                                 b bbb b              b       b bb   b                              

queryA       108:IQASPRDPENFPFVVLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN: 172
                :  **  * *      **** *    ***   *          *   *****  **** ** * ** :
6rir_A_1     111:EHASA-DVEK---MILGNKCDVNDKRQVSKERGEKLALDY-GIKFMETSAKANINVENAFFTLARD: 171
SecStr          :HHS T-T EE---EEEEE TT GGG  S HHHHHHHHHHH-T EEEE BTTTTBSHHHHHHHHHHH:    
ExpBur          :eebee-ebee---bbbbbebeeeeeeebeeeebeebbeee-ebebbbbbbeeeeebeebbbbbbee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123