Protein Model on 6o62 assembly_id=1 (TEMPLATE: 6o62 assembly_id:1 )

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) A 1 (A) polymer(polypeptide(L)) [169 aa] Ras-related protein SEC4 :SEC4_CANAL
2 b A 2 (A) polymer(polypeptide(L)) [169 aa] Ras-related protein SEC4 :SEC4_CANAL 7V(M) 8L(I) 42G 43A(I) 44D 45F 47T(I) 58T(K) 60Q 62W 69R 71Q(R) 72S(T) 73L(I) 74G(T) 75V(T) 76A 77F(Y) 79R 80G 82D(M) 110A(H) 112P(N) 180V 181E (identity: 44.0 %/38.7 %)
3 c B 1 (A) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE 16D 17S 18G 19V 20G 21K 22T(S) 23S(C) 34S(N) 125N 126K 128D 155S 156A 157K (identity: 80.0 %/38.7 %)
4 d B 2 (A) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6o62_A_1 identity=38.7%
queryA         7:VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEF: 106
                :   *    *******  *    *  **        * **              * *********     * ****   **  ***    *     *    :
6o62_A_1      13:MIMKLLLVGDSGVGKSCLLLRFVEDKFNXXXXXXXGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWF-QT: 111
SecStr          :EEEEEEEE  TTSSHHHHHHHHHT    -------  EEEEEEEEETTEEEEEEEEE SSS  TT   HHHHSS SEEEEEEETT HHHHHTHHHHH-HH:    
ExpBur          :bebbbbbbbeeebbbebbbebbeeeeee-------eeeeeeeebebeeeebebebbbbbeebeeeeeeeeebeebebbbbbbbbbeeebbeebeebe-ee:    
Contact         :bb       cccccccc          c       bbbb b          b b b      b bbbbbbb bb b                        

queryA       107:LIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE: 181
                :  *    *   *     *** * * ****     *     * * *  * ***   **   *   *     **  **:
6o62_A_1     112:VTQHANEDAQIF---LVGNKCDDEVNRQVSKEQGQELA-AKLNVPFLEASAKSNENVDSIFYELA--SIIQEKHVE: 181
SecStr          :HHHHS TT EEE---EEEE TT  TT  S HHHHHHHH-HHHT  EEE BTTTTBTHHHHHHHHH--HHHHHH   :    
ExpBur          :beeebeeebbbb---bbbbebeeeeeeebeeeebeebb-eebebebbbbbbeeeeebeebbeebb--eebbeeeee:    
Contact         :   b b            cc c                           ccc                      bb                        


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