[pdbjlvh2]Protein Model on 5ja7_A_1_C

Protein Model on 5ja7_A_1_C_1 (TEMPLATE: 5ja7 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(CATL1_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [222 aa]	Cathepsin K :CATK_HUMAN
2	b		C 1 (A)	non-polymer(6HM)	[([1,1'-biphenyl]-2-yl)methyl]propanedioic acid	114A 233K 236M(K) 237K(R) 294K 316K(R) 317D(N) (identity: 42.9 %/59.5 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5ja7_A_1 identity=59.5%

queryA       113:EAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCK: 212
                : ** *** * *************** ****  ******   *** *  ** ******     * ** ** *  ****** * * ***  ***   **** :
5ja7_A_1       8:RAPDSVDYRKKGYVTPVKNQGQCGSSWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCM: 105
SecStr          :   S EEGGGGT      B TTSB HHHHHHHHHHHHHHHHHHS    B HHHHHHH TT--S TTB   HHHHHHHHHHHT EEBTTTS   SS     :    
ExpBur          :eeeeebbbeeeebbbebeebeebebbbbbbbbbbbbbbbeeeeeeeeebbbbbbbbbbee--bebeeeeebbbbbebbeeeebbbbbeebeeeeeeeeee:    
Contact         : b                                                                                                  

queryA       213:YNPKYSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGY: 311
                :***    *   *   **   ****  *** *** ******   ** **  * *    * *    * ** ****        ** *  ****** **  **:
5ja7_A_1     106:YNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQK----GNKHWIIKNSWGENWGNKGY: 201
SecStr          :  GGGEEE   EEEE  TT HHHHHHHHHHT  EEEEE   SHHHHT  SSEE  TT  TT   EEEEEEEEEEET----TEEEEEEE SB TTSTBTTE:    
ExpBur          :beeebeebebebeeebeeeebebbeebbbebbbbbbbbbbebeebeebeeeebeeeebeeeeeebbbbbbbbbeee----eeebbbbbbbebeebeeebb:    
Contact         :                     b  bb                                                        b                 

queryA       312:VKMAKDRRNHCGIASAASYPTV: 333
                :  **    * ****  ** *  :
5ja7_A_1     202:ILMARNKNNACGIANLASFPKM: 223
SecStr          :EEEESSSSSGGGTTSS EEEE :    
ExpBur          :bbbbbeeebbbbbbbebbbbee:    
Contact         :    bb

Protein Model on 5ja7_A_1_C_1 (TEMPLATE: 5ja7 )

Input Residue Numbers for Focused Sites