Protein Model on 4bqk_A_1_F_1 (TEMPLATE: 4bqk )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(IMA1_HUMAN) A 1 (A) polymer(polypeptide(L)) [424 aa] IMPORTIN SUBUNIT ALPHA-1A :IMA1A_ORYSJ
2 b F 1 (A) non-polymer(PEG) DI(HYDROXYETHYL)ETHER 176A(D) 179S(R) 180E 216P(H) 217D(T) 218M(K) 221L(M) (identity: 14.3 %/52.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4bqk_A_1 identity=52.3%
queryA        77:SVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA: 176
                :*      *  *     ** **   ***** *  ***   *  *  * ** ** * *    *** ************* ** * * ** * *  ** *   :
4bqk_A_1       3:SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSD: 102
SecStr          :THHHHHHHHHSS HHHHHHHHHHHHHHHT SSS  HHHHHHTT HHHHHHHTT TT HHHHHHHHHHHHHHHTS HHHHHHHHHTTHHHHHHHHTT S H:    
ExpBur          :eeeebeebbebeeeeebbebbbebbeebeeeeeebbeebbebebbebbbebbebeebeebbebbbebbbbbbeeeeebbeebbeeebbeebbebbebebe:    
Contact         :                                                                                                   b

queryA       177:HISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAIS: 276
                :   ********* ***    ****   **  **** *      *     *** ****** ** * * *        ** * ** *  * *** * *** *:
4bqk_A_1     103:DVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSM----LRNATWTLSNFCRGK-PQPSFEQTRPALPALARLIHSNDEEVLTDACWALS: 197
SecStr          :HHHHHHHHHHHHHHTT HHHHHHHHHTT HHHHHHT  TT  HHH----HHHHHHHHHHHH SS-S   HHHHTTHHHHHHHHTT   HHHHHHHHHHHH:    
ExpBur          :ebbbbbbebbbbbbeeeeebbeebbeeebbeebbebbeeebeeeb----eebbbebbbbbbeee-eebebeebeebbebbbebbebebeebbebbbebbb:    
Contact         :  bb                                   bbb  b                                                       

queryA       277:YLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN: 375
                :** ** *  *  *   ** * ** **         ****  ****** * ***  **  **    **** * *  * *** ** ******  **** * *:
4bqk_A_1     198:YLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVIN: 297
SecStr          :HHTSSSHHHHHHHHHTT HHHHHHHTT S HHHHHHHHHHHHHHTTS HHHHHHHHTTTHHHHHHHHHHS   HHHHHHHHHHHHHHHTS HHHHHHHHH:    
ExpBur          :bbbeeeeebbebbbeeebbebbbebbebebeebbebbbebbbbbbebeeebbeebbeeebbebbeebbeeeeeeebbebbbebbbebbebeeebbebbbe:    

queryA       376:HGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKLGETEK---------LSIMIEE: 466
                : *    **  *  * *   *** **  * ****   ** ***  * * **  **   *  *  * *    **     * *** *          * ** *:
4bqk_A_1     298:AGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENIL----KVGETDKTLAAGDVNVFSQMIDE: 393
SecStr          :HT HHHHHHHHHHS HHHHHHHHHHHHHHHHH  HHHHHHHHHTT HHHHHHGGGSS HHHHHHHHHHHHHHH----HHHHHHHHHTT S  HHHHHHHH:    
ExpBur          :eebbeebbebbeebeeebebbbbebbbbbbeebeeebbeebbeeebbebbbebbebebeebbbbbbebbbbbb----ebbeeeeeeeeeeebebbeebee:    

queryA       467:CGGLDKIEALQNHENESVYKASLSLIEKYF: 496
                :  ** *** ** * *   *       * * :
4bqk_A_1     394:AEGLEKIENLQSHDNNEIYEKAVKILEAYW: 423
SecStr          :TTHHHHHHHHTT S HHHHHHHHHHHHHH :    
ExpBur          :bebbebbeebeeeebeebeeebeebbeebe:    


Input Residue Numbers for Focused Sites

ex) 2,15,123