Protein Model on 3tkl assembly_id=1 (TEMPLATE: 3tkl assembly_id:1 )

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) A 1 (A) polymer(polypeptide(L)) [171 aa] Ras-related protein Rab-1A :RAB1A_HUMAN
2 b B 1 (B) polymer(polypeptide(L)) [192 aa] LidA protein, substrate of the Dot/Icm system :A5IFX1_LEGPC 41I 42G 43A(V) 44D 45F 47T(I) 58T(K) 60Q 69R 70F 72S(T) 73L(I) 76A(S) 77F(Y) 100D(K) 104D(Q) 107L(D) 108I(R) (identity: 38.9 %/40.3 %)
3 c C 1 (A) non-polymer(MG) MAGNESIUM ION 22T(S) 40T 63D (identity: 66.7 %/40.3 %)
4 d D 1 (A) non-polymer(GTP) GUANOSINE-5'-TRIPHOSPHATE 16D 17S 18G 19V 20G 21K 22T(S) 23S(C) 33F(Y) 35N(E) 37Y 39A(S) 40T 65A 66G 67Q 125N 126K 128D 129L 155S 156A 157K (identity: 78.3 %/40.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3tkl_A_1 identity=40.3%
queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
                :* *    *******  *            *  *** **       *      ***********       ****     * ***    *     *  *  :
3tkl_A_1      16:LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID: 115
SecStr          :EEEEEEE STTSSHHHHHHHHHHS   S     SSEEEEEEEEEETTEEEEEEEEEE  SGGG TTHHHHHTT SEEEEEEETT HHHHHTHHHHHHHHH:    
ExpBur          :ebbbbbbbbeebbbeebbebbbeeeeeeeeeeeeeeeeeeeebebeeeebebebebbbbeeeebeebeebbeebebbbbbbbbeeeebbeebeebbebbe:    
Contact         :        ddddddcd         d d d dcbbbbb b          b b  c ddd bb bb  bb                      b   b  b
Contact         :              d                 d                                                                   

queryA       108:IQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA: 170
                :  **    **      *** **    *              **  ***** * **** * * *:
3tkl_A_1     116:RYAS----ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA: 174
SecStr          :HHS ----TT EEEEEEE TT TTT  S HHHHHHHHHHTT  EEEE TTT TTHHHHHHHHH:    
ExpBur          :eebe----eebbebbbbbebeeeeeeebeeeebeeebeeeebebbbbbbeeeeebeebbebbb:    
Contact         :b                dd dd                         ddd                                                  


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