Protein Model on 3dz8 assembly_id=1 (TEMPLATE: 3dz8 assembly_id:1 )

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) A 1 (A) polymer(polypeptide(L)) [178 aa] Ras-related protein Rab-3B :RAB3B_HUMAN
2 b A 2 (A) polymer(polypeptide(L)) [178 aa] Ras-related protein Rab-3B :RAB3B_HUMAN 26N(F) 30N(D) 33F 34S(T) 35N(P) 36Q(A) 37Y(F) 38K(V) 39A(S) 40T 41I(V) 42G 43A(I) 51M(Y) 53D(H) 58T(K) 72S(T) 73L(I) (identity: 16.7 %/36.1 %)
3 c B 1 (A) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE 16D(N) 17S 18G(S) 19V 20G 21K 22T 23S 125N 126K 128D 129L(M) 155S 156A 157K (identity: 80.0 %/36.1 %)
4 d B 2 (A) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE
5 e C 1 (A) non-polymer(UNX) UNKNOWN ATOM OR ION 17S 63D 64T 65A (identity: 100.0 %/36.1 %)
6 f C 2 (A) non-polymer(UNX) UNKNOWN ATOM OR ION
7 g D 1 (A) non-polymer(UNX) UNKNOWN ATOM OR ION 29V(A) 30N(D) 34S(T) (identity: 0.0 %/36.1 %)
8 h D 2 (A) non-polymer(UNX) UNKNOWN ATOM OR ION
9 i E 1 (A) non-polymer(UNX) UNKNOWN ATOM OR ION
10 j E 2 (A) non-polymer(UNX) UNKNOWN ATOM OR ION 72S(T) (identity: 0.0 %/36.1 %)
11 k F 1 (A) non-polymer(UNX) UNKNOWN ATOM OR ION 32K(T) 52V(R) 163E(R) (identity: 0.0 %/36.1 %)
12 l F 2 (A) non-polymer(UNX) UNKNOWN ATOM OR ION
13 m G 1 (A) non-polymer(UNX) UNKNOWN ATOM OR ION 159A(N) 163E(R) (identity: 0.0 %/36.1 %)
14 n G 2 (A) non-polymer(UNX) UNKNOWN ATOM OR ION
15 o H 1 (A) non-polymer(UNX) UNKNOWN ATOM OR ION 52V(R) 53D(H) (identity: 0.0 %/36.1 %)
16 p H 2 (A) non-polymer(UNX) UNKNOWN ATOM OR ION
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3dz8_A_1 identity=36.1%
queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
                :  *  * * * *****    *    *      * * **  * *      *  **********      * ****    *  * *    *     *     :
3dz8_A_1      23:MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW----A: 118
SecStr          : EEEEEEESTTSSHHHHHHHHHHHTT   EEEEETTTEEEEEEEETTTTEEEEEE HHHHHH HHHHHHHHTT  EEEEEEETT HHHHHTHHHH----H:    
ExpBur          :bebbbbbbeeebbbeebbeebbeebebeeeeeebeeebebbbbebeeeebbbbbbbbebbeebeeebeebbeebbbbbbbbbbeeeebbebbeeb----b:    
Contact         :        cccccccc  b  gb kbbbbbbbbbbb       bkb    b    eee      bb                                  
Contact         :         e            g   g                 oo                  j                                   

queryA       108:IQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI: 169
                : *       *      *** * *   *                 ** **** * * ***   :
3dz8_A_1     119:TQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERL: 180
SecStr          :HHHHHHS TT EEEEEEE TT GGG  S HHHHHHHHHHHT EEEE BTTTTBSHHHHHHHH:    
ExpBur          :eebeebbeebbebbbbbbebeeeeeeebeeeebeebbeeeebebbbbbbeeeeebeebbebb:    
Contact         :                 cc cc                         ccc m   k                                            
Contact         :                                                       m                                            


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