Protein Model on 1z0k assembly_id=1 (TEMPLATE: 1z0k assembly_id:1 )

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) A 1 (A) polymer(polypeptide(L)) [169 aa] GTP-binding protein :RAB4A_HUMAN
2 b B 1 (B) polymer(polypeptide(L)) [61 aa] FYVE-finger-containing Rab5 effector protein rabenosyn-5 :Q59EY8_HUMAN 25M(L) 26N(H) 29V(I) 41I 42G 43A(V) 44D(E) 45F 46L(G) 47T(S) 58T(K) 60Q 62W 69R 70F 73L(V) 76A(S) 77F(Y) (identity: 38.9 %/38.4 %)
3 c E 1 (A) non-polymer(MG) MAGNESIUM ION 22T(S) 40T 63D (identity: 66.7 %/38.4 %)
4 d F 1 (A) non-polymer(GTP) GUANOSINE-5'-TRIPHOSPHATE 16D(N) 17S(A) 18G 19V(T) 20G 21K 22T(S) 23S(C) 33F 37Y(S) 39A(H) 40T 64T 65A 66G 67Q(L) 125N 126K 128D 129L 155S 156A 157K(L) (identity: 60.9 %/38.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:1z0k_A_1 identity=38.4%
queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
                :* *    *  * **  *  *   ***      ***  *  *   *    *  ******* *** *     ****    ** * *   *   *  *    *:
1z0k_A_1       8:LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW----L: 103
SecStr          :EEEEEEEESTTSSHHHHHHHHHHSS  SS    SSEEEEEEEEEETTEEEEEEEEEE  SGGGHHHHHTT TT SEEEEEEETT HHHHHTHHHH----H:    
ExpBur          :ebebbbbbeeebbbbbbbbbbeeeeeeeeeeebebeeebeeebebeeeebebebebbbbeeebeeebeeebeebebbbbbbbbbeeebbebbeeb----b:    
Contact         :        ddddddcd bb  b   d   d dcbbbbbbb          b b bcdddd bb  b  bb                              
Contact         :              d                 d                                                                   

queryA       108:IQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ: 176
                :  *      *      *** **   * *    *       *     ****     ** **   **  *  :
1z0k_A_1     104:TDARMLASQNIVIILCGNKKDLDADREVTFLEASRFA-QENELMFLETSALTGEDVEEAFVQCARKILNK: 172
SecStr          :HHHHHHS TT EEEEEEE TT GGG  S HHHHHHHH-HHTT EEEE  TTT TTHHHHHHHHHHHHH  :    
ExpBur          :eebbeebeeebbbbbbbbeeeeeeeeebeeebbeebb-eeeebbbbbbbbeeeeebeebbbebbeeeeee:    
Contact         :                 dd dd                          ddd                                                 


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