Protein Model on 1tu4 assembly_id=7 (TEMPLATE: 1tu4 assembly_id:7 )

CurrentView:JAVA Change to:[HTML5] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description c(query A)
1 a A 1 (A) polymer(polypeptide(L)) [169 aa] Ras-related protein Rab-5A :RAB5A_HUMAN 68E 69R 70F(Y) 71Q(H) 72S 73L 75V(P) 76A(U) 79R 101S(N) 102W 105E 108I(R) (identity: 53.8 %/43.7 %)
2 b A 2 (A) polymer(polypeptide(L)) [169 aa] Ras-related protein Rab-5A :RAB5A_HUMAN 23S 26N(L) 27Q(R) 31K(G) 32K(Q) 33F 37Y(Q) 44D(A) 156A 157K (identity: 40.0 %/43.7 %)
3 c A(RAB7A_HUMAN) B 1 (B) polymer(polypeptide(L)) [162 aa] Ras-related protein Rab-5A :RAB5A_HUMAN
4 d B 2 (B) polymer(polypeptide(L)) [162 aa] Ras-related protein Rab-5A :RAB5A_HUMAN 39A(S) 41I 67Q 69R 70F(Y) (identity: 60.0 %/43.7 %)
5 e E 1 (A) non-polymer(CO) COBALT (II) ION
6 f E 2 (A) non-polymer(CO) COBALT (II) ION
7 g F 1 (A) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE
8 h F 2 (A) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE
9 i G 1 (B) non-polymer(CO) COBALT (II) ION 22T(S) 63D (identity: 50.0 %/43.7 %)
10 j G 2 (B) non-polymer(CO) COBALT (II) ION
11 k H 1 (B) non-polymer(CO) COBALT (II) ION 68E 71Q(H) (identity: 50.0 %/43.7 %)
12 l H 2 (B) non-polymer(CO) COBALT (II) ION
13 m I 1 (B) non-polymer(SO4) SULFATE ION 67Q 68E 69R (identity: 100.0 %/43.7 %)
14 n I 2 (B) non-polymer(SO4) SULFATE ION
15 o J 1 (B) non-polymer(SO4) SULFATE ION 65A 66G 67Q (identity: 100.0 %/43.7 %)
16 p J 2 (B) non-polymer(SO4) SULFATE ION
17 q K 1 (B) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE 16D(E) 17S 18G(A) 19V 20G 21K 22T(S) 23S 125N 126K 128D 129L 155S 156A 157K (identity: 80.0 %/43.7 %)
18 r K 2 (B) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE
ALIGNMENTS
MODEL[3] Protein A "queryA" TEMPLATE:1tu4_B_1 identity=43.7%
queryA         9:LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLI: 108
                : *   ** * *** **    *   *      **** ***  *  **  *   *********  **    ****     * * *    *     *  *   :
1tu4_B_1       8:FKLVLLGESAVGKSSLVLRFVKGQFXXXQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPUYYRGAQAAIVVYDITNEESFARAKNWVKELQR: 107
SecStr          :EEEEEE STTSSHHHHHHHHTTT  ---  S TTEEEEEEEEEETTEEEEEEEEEE  SGGGGGGTHHHHTT SEEEEEEETT HHHHHHHHHHHHHHHH:    
ExpBur          :bebbbbbbeebbbeebbeebbeeee---eeeeebbebbeeebeeeeeebebebbbbeeeeeebeebbebbeebebbbbbbbbeeeebbeebeebbeebee:    
Contact         :       qqqqqqib  bb   bbb   b d d  b                  i oodaaaaaa aa  a                     aa  a  a
Contact         :             qq                                           mkddk                                     
Contact         :                                                          omm                                       

queryA       109:QASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR: 171
                :****    *      *** ** * * *    **      *     *****   **   *  ** :
1tu4_B_1     108:QASP----NIVIALSGNKADLANKRAVDFQEAQSYA-DDNSLLFUETSAKTSUNVNEIFUAIAK: 166
SecStr          :HS T----T EEEEEEE GGGGGG  S HHHHHHHH-HHTT EEEE  TTT TTHHHHHHHHHH:    
ExpBur          :ebee----ebbbbbbbbebeeeeeeebeeeebeebb-eeeebebebbbbeeeeebeebbebbbe:    
Contact         :                qq qq                          qbb                                                  
Contact         :                                                qq                                                  


Input Residue Numbers for Focused Sites

ex) 2,15,123