Protein Model on 1tu4 assembly_id=7 (TEMPLATE: 1tu4 assembly_id:7 )

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) A 1 (A) polymer(polypeptide(L)) [169 aa] Ras-related protein Rab-5A :RAB5A_HUMAN
2 b A 2 (A) polymer(polypeptide(L)) [169 aa] Ras-related protein Rab-5A :RAB5A_HUMAN
3 c B 1 (B) polymer(polypeptide(L)) [162 aa] Ras-related protein Rab-5A :RAB5A_HUMAN 41I 42G 43A 44D(A) 45F 65A 67Q 69R 70F(Y) 71Q(H) 72S 73L 74G(A) 75V(P) 76A(U) (identity: 60.0 %/43.7 %)
4 d B 2 (B) polymer(polypeptide(L)) [162 aa] Ras-related protein Rab-5A :RAB5A_HUMAN 9L(F) 79R 80G 81A 82D(Q) 111S 112P 117N (identity: 75.0 %/43.7 %)
5 e E 1 (A) non-polymer(CO) COBALT (II) ION 22T(S) (identity: 0.0 %/43.7 %)
6 f E 2 (A) non-polymer(CO) COBALT (II) ION
7 g F 1 (A) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE 16D(E) 18G(A) 19V 20G 21K 22T(S) 23S 125N 126K 128D 129L 155S 156A 157K (identity: 78.6 %/43.7 %)
8 h F 2 (A) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE
9 i G 1 (B) non-polymer(CO) COBALT (II) ION
10 j G 2 (B) non-polymer(CO) COBALT (II) ION
11 k H 1 (B) non-polymer(CO) COBALT (II) ION 70F(Y) 71Q(H) (identity: 0.0 %/43.7 %)
12 l H 2 (B) non-polymer(CO) COBALT (II) ION
13 m I 1 (B) non-polymer(SO4) SULFATE ION
14 n I 2 (B) non-polymer(SO4) SULFATE ION
15 o J 1 (B) non-polymer(SO4) SULFATE ION
16 p J 2 (B) non-polymer(SO4) SULFATE ION
17 q K 1 (B) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE
18 r K 2 (B) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE 107L(Q) 108I(R) 110A 111S 112P (identity: 60.0 %/43.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:1tu4_A_1 identity=43.7%
queryA         9:LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLI: 108
                : *   ** * *** **    *   *      **** ***  *  **  *   *********  **    ****     * * *    *     *  *   :
1tu4_A_1       8:FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPUYYRGAQAAIVVYDITNEESFARAKNWVKELQR: 107
SecStr          :EEEEEE STTSSHHHHHHHHHHTS B   EE GGG EEEEEEE TTSSEEEEEEEESSGGGTS   HHHHTTEEEEEEEEETT HHHHHHHHHHHHHHHH:    
ExpBur          :bbbbbbbeeebbbeebbeebbeebeeeeeeeeeeeebebbbbebeeeebebebbbbeeebeeeebeeebbeebebbbbbbbbeeeebbeebeebbeebee:    
Contact         :d      g ggggeg                 ccccc                   c c cccccccc  dddd                        rr
Contact         :             g                                               kk                                     

queryA       109:QASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR: 171
                :****    *      *** ** * * *    **      *     *****   **   *  ** :
1tu4_A_1     108:QASP----NIVIALSGNKADLANKRAVDFQEAQSYA-DDNSLLFUETSAKTSUNVNEIFUAIAK: 166
SecStr          :HS T----T EEEEEEE TT GGG  S HHHHHHHH-HHTT EEEE  TTT TTHHHHHHHHHH:    
ExpBur          :ebee----ebbbbbbbbebeeeeeeebeeeebbebb-eeeebbbebbbbeeeeebeebbeebbe:    
Contact         : rdd    d       gg gg                          ggg                                                  
Contact         :  rr                                                                                                


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