Protein Model on 1tu4 assembly_id=5 (TEMPLATE: 1tu4 assembly_id:5 )

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) A 1 (A) polymer(polypeptide(L)) [169 aa] Ras-related protein Rab-5A :RAB5A_HUMAN
2 b A 2 (A) polymer(polypeptide(L)) [169 aa] Ras-related protein Rab-5A :RAB5A_HUMAN
3 c B 1 (B) polymer(polypeptide(L)) [162 aa] Ras-related protein Rab-5A :RAB5A_HUMAN 41I 42G 43A 44D(A) 45F 65A 67Q 69R 70F(Y) 71Q(H) 72S 73L 74G(A) 75V(P) 76A(U) (identity: 60.0 %/43.7 %)
4 d B 2 (B) polymer(polypeptide(L)) [162 aa] Ras-related protein Rab-5A :RAB5A_HUMAN 9L(F) 79R 80G 81A 82D(Q) 111S 112P 117N (identity: 75.0 %/43.7 %)
5 e C 1 (C) polymer(polypeptide(L)) [169 aa] Ras-related protein Rab-5A :RAB5A_HUMAN
6 f C 2 (C) polymer(polypeptide(L)) [169 aa] Ras-related protein Rab-5A :RAB5A_HUMAN 30N(K) 31K(G) 32K(Q) 33F 34S(H) 35N(E) 36Q(F) 56L(T) 58T(K) (identity: 11.1 %/43.7 %)
7 g D 1 (D) polymer(polypeptide(L)) [164 aa] Ras-related protein Rab-5A :RAB5A_HUMAN 37Y(Q) 38K(E) 39A(S) 40T 42G 43A 65A 66G (identity: 62.5 %/43.7 %)
8 h D 2 (D) polymer(polypeptide(L)) [164 aa] Ras-related protein Rab-5A :RAB5A_HUMAN
9 i E 1 (A) non-polymer(CO) COBALT (II) ION 22T(S) (identity: 0.0 %/43.7 %)
10 j E 2 (A) non-polymer(CO) COBALT (II) ION
11 k F 1 (A) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE 16D(E) 18G(A) 19V 20G 21K 22T(S) 23S 125N 126K 128D 129L 155S 156A 157K (identity: 78.6 %/43.7 %)
12 l F 2 (A) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE
13 m G 1 (B) non-polymer(CO) COBALT (II) ION
14 n G 2 (B) non-polymer(CO) COBALT (II) ION
15 o H 1 (B) non-polymer(CO) COBALT (II) ION 70F(Y) 71Q(H) (identity: 0.0 %/43.7 %)
16 p H 2 (B) non-polymer(CO) COBALT (II) ION
17 q I 1 (B) non-polymer(SO4) SULFATE ION
18 r I 2 (B) non-polymer(SO4) SULFATE ION
19 s J 1 (B) non-polymer(SO4) SULFATE ION
20 t J 2 (B) non-polymer(SO4) SULFATE ION
21 u K 1 (B) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE
22 v K 2 (B) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE 107L(Q) 108I(R) 110A 111S 112P (identity: 60.0 %/43.7 %)
23 w L 1 (C) non-polymer(CO) COBALT (II) ION
24 x L 2 (C) non-polymer(CO) COBALT (II) ION
25 y M 1 (C) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE
26 z M 2 (C) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE
27 1 N 1 (D) non-polymer(CO) COBALT (II) ION
28 2 N 2 (D) non-polymer(CO) COBALT (II) ION
29 3 O 1 (D) non-polymer(CO) COBALT (II) ION
30 4 O 2 (D) non-polymer(CO) COBALT (II) ION
31 5 P 1 (D) non-polymer(SO4) SULFATE ION
32 6 P 2 (D) non-polymer(SO4) SULFATE ION
33 7 Q 1 (D) non-polymer(SO4) SULFATE ION
34 8 Q 2 (D) non-polymer(SO4) SULFATE ION
35 9 R 1 (D) non-polymer(SO4) SULFATE ION 69R (identity: 100.0 %/43.7 %)
36 A R 2 (D) non-polymer(SO4) SULFATE ION
37 B S 1 (D) non-polymer(SO4) SULFATE ION
38 C S 2 (D) non-polymer(SO4) SULFATE ION
39 D T 1 (D) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE
40 E T 2 (D) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:1tu4_A_1 identity=43.7%
queryA         9:LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLI: 108
                : *   ** * *** **    *   *      **** ***  *  **  *   *********  **    ****     * * *    *     *  *   :
1tu4_A_1       8:FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPUYYRGAQAAIVVYDITNEESFARAKNWVKELQR: 107
SecStr          :EEEEEE STTSSHHHHHHHHHHTS B   EE GGG EEEEEEE TTSSEEEEEEEESSGGGTS   HHHHTTEEEEEEEEETT HHHHHHHHHHHHHHHH:    
ExpBur          :bbbbbbbeeebbbeebbeebbeebeeeeeeeeeeeebebbbbebeeeebebebbbbeeebeeeebeeebbeebebbbbbbbbeeeebbeebeebbeebee:    
Contact         :d      k kkkkik      fffffffggggccccc          f f      cgc cccccccc  dddd                        vv
Contact         :             k                   gg                     g   9oo                                     

queryA       109:QASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR: 171
                :****    *      *** ** * * *    **      *     *****   **   *  ** :
1tu4_A_1     108:QASP----NIVIALSGNKADLANKRAVDFQEAQSYA-DDNSLLFUETSAKTSUNVNEIFUAIAK: 166
SecStr          :HS T----T EEEEEEE TT GGG  S HHHHHHHH-HHTT EEEE  TTT TTHHHHHHHHHH:    
ExpBur          :ebee----ebbbbbbbbebeeeeeeebeeeebbebb-eeeebbbebbbbeeeeebeebbeebbe:    
Contact         : vdd    d       kk kk                          kkk                                                  
Contact         :  vv                                                                                                


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