Protein Model on 1ky3_A_1_C_1 (TEMPLATE: 1ky3 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) A 1 (A) polymer(polypeptide(L)) [162 aa] GTP-BINDING PROTEIN YPT7P :YPT7_YEAST
2 b C 1 (A) non-polymer(GDP) GUANOSINE-5'-DIPHOSPHATE 16D 17S 18G 19V 20G 21K 22T 23S 33F(Y) 125N 126K 128D 155S 156A 157K (identity: 93.3 %/62.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:1ky3_A_1 identity=62.1%
queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD-DRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEF: 106
                : *****************  *** * * **   ********** ** *   *** ****          ************ ***    *    ******:
1ky3_A_1       8:ILKVIILGDSGVGKTSLMHRYVNDKYSQQYXXXIGADFLTKEVTVDGDKVATMQVWDTAXXXXXXXXXXAFYRGADCCVLVYDVTNASSFENIKSWRDEF: 107
SecStr          :EEEEEEE  TTSSHHHHHHHHHHS   TT ---   S EEEEE  SSS  EEEEEE   ----------  STT  EEEEEEETT HHHHHTHHHHHHHH:    
ExpBur          :ebbbbbbbbeebbbeebbbbbbeeeeeeee---eeeeebeeebeeeeeeebebbbbbee----------eeeeebbbbbbbbbbeeeebbeebeeebeeb:    
Contact         :        bbbbbbbb         b                                                                          

queryA       107:LIQASPRDPENFPFVVLGNKIDLENRQ--VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ: 176
                :*  *    ** **** ****** *     *  * **    *   ** * **** ****  **  *** ** *:
1ky3_A_1     108:LVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ: 179
SecStr          :HHHH  S TTT  EEEEEE TTS GGG  S HHHHHHHHHHTTS  EEEEBTTTTBSHHHHHHHHHHHHHHH:    
ExpBur          :eeebebeeeeebbbbbbbbeeebeeeeeebeeeebeebbeebeebebbbbbbeeeeebeebbebbbebbeee:    
Contact         :                  bb b                            bbb                                               


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