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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(RAB7A_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [162 aa] | GTP-BINDING PROTEIN YPT7P :YPT7_YEAST | |
2 | b | C 1 (A) | non-polymer(GDP) | GUANOSINE-5'-DIPHOSPHATE | 16D 17S 18G 19V 20G 21K 22T 23S 33F(Y) 125N 126K 128D 155S 156A 157K (identity: 93.3 %/62.1 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:1ky3_A_1 identity=62.1% |
queryA 8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD-DRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEF: 106 : ***************** *** * * ** ********** ** * *** **** ************ *** * ******: 1ky3_A_1 8:ILKVIILGDSGVGKTSLMHRYVNDKYSQQYXXXIGADFLTKEVTVDGDKVATMQVWDTAXXXXXXXXXXAFYRGADCCVLVYDVTNASSFENIKSWRDEF: 107 SecStr :EEEEEEE TTSSHHHHHHHHHHS TT --- S EEEEE SSS EEEEEE ---------- STT EEEEEEETT HHHHHTHHHHHHHH: ExpBur :ebbbbbbbbeebbbeebbbbbbeeeeeeee---eeeeebeeebeeeeeeebebbbbbee----------eeeeebbbbbbbbbbeeeebbeebeeebeeb: Contact : bbbbbbbb b queryA 107:LIQASPRDPENFPFVVLGNKIDLENRQ--VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ: 176 :* * ** **** ****** * * * ** * ** * **** **** ** *** ** *: 1ky3_A_1 108:LVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ: 179 SecStr :HHHH S TTT EEEEEE TTS GGG S HHHHHHHHHHTTS EEEEBTTTTBSHHHHHHHHHHHHHHH: ExpBur :eeebebeeeeebbbbbbbbeeebeeeeeebeeeebeebbeebeebebbbbbbeeeeebeebbebbbebbeee: Contact : bb b bbb |