Protein Model on 1k5d assembly_id=1 (TEMPLATE: 1k5d assembly_id:1 )

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) A 1 (A) polymer(polypeptide(L)) [206 aa] GTP-binding nuclear protein RAN :RAN_HUMAN
2 b B 1 (B) polymer(polypeptide(L)) [146 aa] Ran-specific GTPase-activating protein :RANG_HUMAN 7V 9L(F) 27Q(R) 30N(T) 31K(G) 32K(E) 49E(V) 50V(F) 53D(N) 54D(R) 55R(G) 117N 118F(I) 119P 144Y(H) 145S(R) 148N 149I(L) 163E 168T(W) 172N(K) 173A(L) 174L(I) (identity: 21.7 %/34.0 %)
3 c C 1 (C) polymer(polypeptide(L)) [344 aa] Ran GTPase activating protein 1 :RNA1_SCHPO 16D 18G 36Q(K) 37Y 39A 40T 41I(L) 42G 44D(E) 67Q 68E 69R(K) 73L 77F(Y) 92A(S) 93P(R) 94N(V) 126K 131N(D) 133Q(K) (identity: 50.0 %/34.0 %)
4 d M 1 (A) non-polymer(MG) MAGNESIUM ION 22T 40T (identity: 100.0 %/34.0 %)
5 e N 1 (A) non-polymer(GNP) PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER 17S(G) 18G 19V(T) 20G 21K 22T 23S(T) 33F 34S(E) 35N(K) 37Y 39A 40T 64T 65A 66G 67Q 125N 126K 128D 129L(I) 155S 156A 157K (identity: 75.0 %/34.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:1k5d_A_1 identity=34.0%
queryA         6:KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDE: 105
                : *  *    ** * ***          *   * ** *                   ******* *  *    *  * *    ****   * *    *   :
1k5d_A_1       8:QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD: 107
SecStr          : EEEEEEEEE TTSSHHHHHHHHHHS    S     SEEEEEEEEEETTEEEEEEEEEE SSS SSGGGHHHHTT  EEEEEEETT HHHHHTHHHHHHH:    
ExpBur          :eeebbbbbbbbeebbbeebbebbeeeeeeeeeeebeeeeeeebebebeeeebebebebbbbeeeeeeebeebbeebebbbbbbbbeeeebbeebeebbeb:    
Contact         : b b      ceceeede   b  bbbeeecc cccc c    bb  bbb        eeeccc   c   c              ccc           
Contact         :            e   e              e ed                          e                                      
Contact         :                                  e                                                                 

queryA       106:FLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL: 174
                :       *  ** * *  *** *   * *  *        * *  *   ***   * *  *   **   :
1k5d_A_1     108:LV-----RVCENIPIVLCGNKVDIKDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKLI: 169
SecStr          :HH-----HHH S  EEEEEE TTSSS  S TTT  --HHHHTT EEEE  TTT TTTTHHHHHHHHHHH:    
ExpBur          :be-----eebeebebbbbbbebeeeeeebeeeebe--bbeeeebebbbbbbeeeebeeebbbbbbeeee:    
Contact         :           bbb     ec ee c c          bb  bb     eee     b    b   bbb                               
Contact         :                    e                                                                               


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