Protein Model on 1g16_D_1_O_1 (TEMPLATE: 1g16 )

CurrentView:JAVA Change to:[HTML5] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) D 1 (D) polymer(polypeptide(L)) [160 aa] RAS-RELATED PROTEIN SEC4 :SEC4_YEAST
2 b O 1 (D) non-polymer(CO) COBALT (II) ION 113R(H) (identity: 0.0 %/37.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:1g16_D_1 identity=37.1%
queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
                :  *    *******  *    *  **          **  * *      *  ***********     * ****    ** * *   **     *     :
1g16_D_1       3:IUKILLIGDSGVGKSCLLVRFVEDKFNPXXXXXXXIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAUGIILVYDITDERTFTNIKQW----F:  98
SecStr          : EEEEEES TTSSHHHHHHHHHH     -------  EEEEEEEETTEEEEEEEE   GGGGGGTTSTTTTTT  EEEEEEETT HHHHHTHHHH----H:    
ExpBur          :ebbbbbbbbeebbbeebbebbeeeeeee-------ebeeeeebebeeeebebebbbbeeeeeeebeeeebbeebebbbbbbbbeeeebbeebeeb----e:    

queryA       108:IQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR: 171
                :                *** * * * *      *       **  * ***   **   * * * :
1g16_D_1      99:KTVNEHANDEAQLLLVGNKSDUETRVVTADQGEALA-KELGIPFIESSAKNDDNVNEIFFTLAK: 161
SecStr          :HHHHHHS TT EEEEEEE TT TT  S HHHHHHHH-HHHT  EEE BTTTTBSHHHHHHHHHH:    
ExpBur          :ebbeeebeeebbbbbbbbeeeeeeeebeeeebeebb-eebebebbbbbbeeeeebeebbeebbe:    
Contact         :     b                                                                                              


Input Residue Numbers for Focused Sites

ex) 2,15,123