[pdbjlvh2]Protein Model on 4b8p_B

Protein Model on 4b8p_B_1 (TEMPLATE: 4b8p )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(IMA1_HUMAN)	B 1 (B)	polymer(polypeptide(L)) [421 aa]	IMPORTIN SUBUNIT ALPHA-1A :IMA1A_ORYSJ

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:4b8p_B_1 identity=52.6%

queryA        81:IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE: 180
                :   *  *     ** **   ***** *  ***   *  *  * ** ** * *    *** ************* ** * * ** * *  ** *      *:
4b8p_B_1      41:MIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVRE: 140
SecStr          :HHHHHSSS HHHHHHHHHHHHHHHHSSS   HHHHHHTT HHHHHHHTT TT HHHHHHHHHHHHHHHTS HHHHHHHHHTTHHHHHHHGGG S HHHHH:    
ExpBur          :beebbebeeeeebbebbbebbeebeeeeebebeebbeeebbebbbebbeeeebeebbbbbbebbbbbbeeeeebbeebeeeebbeebbebbebebeebbb:    

queryA       181:QAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTD: 280
                :******** ***    ****   **  **** *      *     *** ****** ** * * *        ** * ** *  * *** * *** *** *:
4b8p_B_1     141:QAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSM----LRNATWTLSNFCRGK-PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSD: 235
SecStr          :HHHHHHHHHHTS HHHHHHHHHTT HHHHHTT STT  HHH----HHHHHHHHHHHH SS-S   HHHHTTHHHHHHHHTT   HHHHHHHHHHHHHHSS:    
ExpBur          :bbbebbbbbbeeeeebbeebbeeebbeebbebeeeebeeeb----eebbbbbbbbbbeee-eebebeebeebbebbbebbeeebeebbbbbbebbbebbe:    

queryA       281:GPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV: 379
                :* *  *  *   ** * ** **         ****  ****** * ***  **  **    **** * *  * *** ** ******  **** * * *  :
4b8p_B_1     236:GTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGII: 335
SecStr          :S HHHHHHHHTTT HHHHHHGGG S HHHHHHHHHHHHHHTTS HHHHHHHHTTTHHHHHHHHHHS   HHHHHHHHHHHHHHHTS HHHHHHHHHHT H:    
ExpBur          :eeeebbebbbeeebbebbbebbeeebeebbebbbebbbbbbebeeebbeebbeeebbebbbebbeeeeeeebbeebbebbbebbebeeebbeebbeeebb:    

queryA       380:PFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKLGETEK---------LSIMIEECGGL: 470
                :  **  *  * *   *** **  * ****   ** ***  * * **  **   *  *  * *    **     * *** *          * ** *  **:
4b8p_B_1     336:GPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENIL----KVGETDKTLAAGDVNVFSQMIDEAEGL: 431
SecStr          :HHHHHHHHHS HHHHHHHHHHHHHHHHH  HHHHHHHHHTT HHHHHGGGG S HHHHHHHHHHHHHHH----HHHHHHHHHTT SS HHHHHHHHTT H:    
ExpBur          :eebbebbeebeeebeebbbebbbbbbeebeeebbeebbeeebbebbbebbebeeeebbbbbbebbbbbb----ebbeeeeeeeeeeebebbeebeebebb:    

queryA       471:DKIEALQNHENESVYKASLSLIEKYF: 496
                : *** ** * *   *       * * :
4b8p_B_1     432:EKIENLQSHDNNEIYEKAVKILEAYW: 457
SecStr          :HHHHGGGG S HHHHHHHHHHHHHH :    
ExpBur          :ebbeebeeeeeeebeeebbebbeebe:

Protein Model on 4b8p_B_1 (TEMPLATE: 4b8p )

Input Residue Numbers for Focused Sites