Protein Model on 1bk6_D_1 (TEMPLATE: 1bk6 )

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[sequence-replaced 3D model] [for PyMOL]
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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description
1 a A(IMA1_HUMAN) D 1 (B) polymer(polypeptide(L)) [422 aa] KARYOPHERIN ALPHA :IMA1_YEAST
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:1bk6_D_1 identity=49.6%
queryA        81:IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE: 180
                :     **     ** **   *  ****  ****  * **  *  * *         * * ************ *** ***  * * ** **        *:
1bk6_D_1       4:MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKE: 103
SecStr          :HHHHHT S HHHHHHHHHHHHHTTS SS   HHHHHHTT HHHHHHTTSTTS HHHHHHHHHHHHHHTTS HHHHHHHHHTTHHHHHHHHHHHS HHHHH:    
ExpBur          :bbeebeeeeeebbeebbebbbeebeeeeeeebeebbeeebbebbbebbeeeeeeebbbbbbebbbbbbeeeeebbeebbeeebbebbbebbeebeeebeb:    

queryA       181:QAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTD: 280
                :** ***** ***    ** *    *  * * *       *      *  ********* * * *    * * ****  *    * * * * ******* *:
1bk6_D_1     104:QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-----NSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSD: 198
SecStr          :HHHHHHHHHHHH HHHHHHHHHTT HHHHHHHT-----TS  HHHHHHHHHHHHHHH  SSS   HHHHGGGHHHHHHHTT S HHHHHHHHHHHHHHHS:    
ExpBur          :bbbebbbbbbeeeeebbeebbeeebbebbeebb-----eeeeeebbebbbebbbbbbeeeeeebeeebbeebbebbbebbeeeeeebbbbbbebbbbbbe:    

queryA       281:GPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP: 380
                :** * *  *        ** **        ****** ****** * ****** ** *     **  ** ** *** ** ******   *** *    * *:
1bk6_D_1     199:GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP: 298
SecStr          :S HHHHHHHHHTT HHHHHHGGG S HHHHHHHHHHHHHHTTS HHHHHHHHHTTHHHHHHHHTT SSHHHHHHHHHHHHHHTTS HHHHHHHHHTT HH:    
ExpBur          :eeeebbeebbeeebbeebbebbebeeeebbebbbebbbbbbebeeebbeebbebebbebbeebbebeeeebeebbbebbbebbeeeeebbeebbebebbe:    

queryA       381:FLVSVLSKADFKTQKEAVWAVTNYTSGGTV--EQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKLGETEKLSI-----MIEECGGLDKI: 473
                : **  *  *  ** *** **  *  ***      * ***  * * **  **   *  ** * ***  **    *   *   * *      **  **  **:
1bk6_D_1     299:PLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIIKMGEADKEARGLNINENADFIEKAGGMEKI: 398
SecStr          :HHHHHHHHS HHHHHHHHHHHHHHHHTTTT HHHHHHHHHTT HHHHHHHTTT  HHHHHHHHHHHHHHHHHHHHHHHHTT SS HHHHHHHHTTHHHHH:    
ExpBur          :ebbebbeebeeebbebbbebbbbbbebbeeeeebbeebbeeebbebbbebbeebeeebbebbbebbbebbebbeeebeeeeeeebebbeebbebebeebb:    

queryA       474:EALQNHENESVYKASLSLIEKYF: 496
                :   *  **   *      ** **:
1bk6_D_1     399:FNCQQNENDKIYEKAYKIIETYF: 421
SecStr          :HHGGG S HHHHHHHHHHHHHH :    
ExpBur          :eebbebeeeebeebbebbbeebb:    


Input Residue Numbers for Focused Sites

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