Protein Model on 2gth_A_2_A_3
(TEMPLATE: 
2gth
)Protein Model on 2gth_A_2_A_3
(TEMPLATE: 2gth
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(queryA) | A 2 (A) | polymer(polypeptide(L)) [348 aa] | Replicase polyprotein 1ab :R1AB_CVMA5 | |
| 2 | b | A 3 (A) | polymer(polypeptide(L)) [348 aa] | Replicase polyprotein 1ab :R1AB_CVMA5 | 45N 46K(N) 47T 48T(P) 73N(R) 90R(K) 94A(F) 96I(S) 240F 241S(N) 242H(Q) 243S(K) 264E(V) 266E(Q) 268F 269I(V) 271M(Y) 279F 281T 283A(E) 285T(S) 286G 290C(S) 291V (identity: 33.3 %/49.3 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:2gth_A_2 identity=49.3% |
queryA 1:SLENVAFNVVNKGHFDGQQGEVPVSIINNTVYTKVDGVDVELFENKTTLPVNVAFELWAKRNIKPVPEVKILNNLGVDIAANTVIWDYKRDAPAHISTIG: 100
:***** * ** ***** ** * * * * ** * * * * *** ** *** * * ** * ** * * *** * ** :
2gth_A_2 2:SLENVVYNLVNAGHFDGRAGELPCAVIGEKVIAKIQNEDVVVFKNNTPFPTNVAVELFAKRSIRPHPELKLFRNLNIDVCWSHVLWDYAKDSVFCSSTYK: 101
SecStr : HHHHHHHHHHTSS EEEETTEEEEEETTEEEEEEE SSS HHHHHHHHHTB S B HHHHHHTT EEBT B EETTTTEESSS BBS:
ExpBur :eeebbbebbeeeeeeeeeeeebeeeeeeeebbbeeeeeeeeebebebebebebbbbbbbebbeebbbbbbbbbbbebebbbebbbbbeeeebbbbeebbe:
Contact : bbbb b b b b
queryA 101:VCSMTDIAKKPTETICAPLTVFFDGRVDGQVDLFRNARNGVLITEGSVKGLQPSVGPKQASLNGVTL--IGEA-VKTQFNYYKKVDGVV-----------: 186
:** ** * * **** * * **** * * * ** * **** * * * * * * :
2gth_A_2 102:VCKYTDLQ------CIESLNVLFDGRDNGALEAFKKCRNGVYINTTKIKSLSMIKGPQRADLNGVVVEKVGDSDVEFWFAVRKDGDDVIFSRTGSLEPSH: 195
SecStr :S TTTB S------ SSSEEEEETTSTTHHHHHTT SEEEEEESS TTS EE S EEETTEEESBSSSSB EEEEEETTEE SSS SS :
ExpBur :bbeebeee------ebeeebbbbbeebeebeeebeebebbbbbbeeeeeebebbebbebbbeeeeebeeeeeeebebbbbbbeeeeeeeeeeeeeeeeee:
queryA 187:--------------------QQLPETYFTQSRNLQEFKPRSQMEIDFLELAMDEFIERYKLEGYAFEHIVYGDFSHSQLGGLHLLIGLAKRFKESPFELE: 266
: * ***** * * *** ** ** * * ** * * ***** *** * ********** * * :
2gth_A_2 196:XXXXXXXXXXXXXXXXXXXXXXARGTIFTQSRLLSSFTPRSEMEKDFMDLDDDVFIAKYSLQDYAFEHVVYGSFNQKIIGGLHLLIGLARRQQKSNLVIQ: 295
SecStr :---------------------- S B GGG SHHHHHHHHS HHHHHHHTT TTS HHHHHH B SSSB B BHHHHHHHHTTS EEEE:
ExpBur :----------------------eebebbbbbbebeebeeebebbebbbeeeeeebbeeeebeeeebeebbbbebeeeebbbbbbbbbbbebeeebebeee:
Contact : bbbb b b
queryA 267:DFIPMDSTVKNYFITDAQTGSSKCVCSVIDLLLDDFVEIIKSQDLSVVSKVVKVTIDYTEISFMLWCKDGHVETF: 341
: * ** ***** **** ** ********** * ** * ***** * * ***** * **:
2gth_A_2 296:EFVTYDSSIHSYFITDENSGSSKSVCTVIDLLLDDFVDIVKSLNLKCVSKVVNVNVDFKDFQFMLWCNEEKVMTF: 370
SecStr : SS S SEEEEEEEETTT EEEEEEEE HHHHHHHHHH SSSEEEEEEETTEEEEEEE SS EEE :
ExpBur :eeeeebbbbbebebebeeeebebeebbbbbbbbeebbebbeebeeeeeeeebebbbbbebbebbbeeeebebeee:
Contact : bb b b b b bb bb
|
[assembly_id:1]
[help]