CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(R1AB_SARS2) | A 1 (A) | polymer(polypeptide(L)) [832 aa] | RNA-directed RNA polymerase :R1AB_SARS2 | |
2 | b | B 1 (C) | polymer(polypeptide(L)) [114 aa] | Non-structural protein 8 :R1AB_SARS2 | 4662L 4663L 4664K 4665Y 4666D 4716T 4718F 4720P 4721L 4722V 4723R 4724K 4728D 4730V 4731P 4732F 4733V 4760F 4763L 4766Y 4767A 4771A 4772M 4773H 4774A 4775A 4776S 4777G 4778N 4779L 4780L 4781L 4784R 4790V 4797V 4839N 4901W 4907Y 4909D 4910S (identity: 100.0 %/92.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7l1f_A_1 identity=92.7% |
queryA 4424:YRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYAL:4523 :******************* ***************** *************: 7l1f_A_1 1:YRAFDIYNDKVAGFAKFLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETIYNLLKDCPAVAKHDXXXXXXXXXXXXXXXXXXLTKYTMADLVYAL: 100 SecStr : EEEEE SS EEEEE --------------------------------- TTTTTSTTSTTB ------------------ SS HHHHHHTT: ExpBur :eebbbbeeeebbbbbeeee---------------------------------eebeeebeeeebbeeee------------------eeebbbbbbbbbb: queryA 4524:RHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGV:4623 :****************************************************************************************************: 7l1f_A_1 101:RHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGV: 200 SecStr :TS TTS HHHHHHHHHTTS SSSSSSSS S TTT TTHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTEEEE GGGB SSS B S EE TT : ExpBur :bebeeeebeebeebbeeeebbeeebbeeeebbbbeebeebeebbeebbeebbebbeebbebbeebeeebbebebebbbbbbebebeeeeebeeeeeeebe: queryA 4624:PVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVR:4723 :****************************************************************************************************: 7l1f_A_1 201:PVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVR: 300 SecStr :EE HHHHHHHHHHHHHHTTTSSSSBSSS SSS B TT HHHHHHHHHHSTT SS SSSSS SSSHHHHHHHHHHHHTTTS TTS EE : ExpBur :bebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebeebbeebbeebbeebeeebebebeebeebebbbbbbbbbbbbbebbeeebbeebee: Contact : bbbbb b b bbbb queryA 4724:KIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKE:4823 :****************************************************************************************************: 7l1f_A_1 301:KIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKE: 400 SecStr :EEEETTEEEE EEE SSS EEE S SB SS HHHHHHHHH THHHHTTSEE SSS EEEESSS EE HHHHHHHTTTT S: ExpBur :ebebeeeeeebbbbbbbebbbbbebeeeeeeeeeeeebeebbeebbbeebeeeeeeeebeebebebebbeeeeeeeeebeeeeebeebeebbeeeeeeee: Contact :b b bbbb b b bb bbbbbbbbbbb b b b queryA 4824:GSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYT:4923 :****************************************************************************************************: 7l1f_A_1 401:GSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYT: 500 SecStr :SSS S B TTHHHHHHGGGGG SHHHHHHHHHGGGGS S GGG S S BTGGGT TTHHHHSS HHHHHHHHHHT: ExpBur :eeeeebeeeeeeeeeebebebbeebeebeebbbbbbbbebbbbbbeebbeebebbbbebeeeeeeeeeeebbbbbeeebebeebeeebeeeebeebbeeb: Contact : b b b bb queryA 4924:KRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLR:5023 :****************************************************************************************************: 7l1f_A_1 501:KRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLR: 600 SecStr :TT BBB BSSS B HHHHHHHHHHHHHHHHHHTT SSSSB S STTTHHHHHHHHHTSS SSEEE TTSTT HHHH: ExpBur :bebbbbbbbebeeeeeeeeeeebebebebbbbbbbbbebbbbebeeebeeeeeebbbeeeeeeebbbeebbeebbeeeeebebbbbebbebebbbbbbbb: queryA 5024:IMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECL:5123 :****************************************************************************************************: 7l1f_A_1 601:IMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECL: 700 SecStr :HHHHHHTT TTT HHHHHHHHHHHHHHHTS BBSSSSEE SS SS TTHHHHHHHHHHHHHHHHHHHHHHTS TTT HHHHHHHHHHHHHH: ExpBur :bbbbbbbbeebeeebeeeeebbbbbbbbbbbbebebbbeebbbebebbbbeebebbeebbbbbbbbbbbbbbbbbbbebbbeebeeeebeebbeebbebb: queryA 5124:YRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPY:5223 :****************************************************************************************************: 7l1f_A_1 701:YRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPY: 800 SecStr :HT S HHHHHHHHHHHHHHEEEEEETTEEEEEEETTTTTTTSS HHHHHHHHHHTS TTT B SSS S SSS EE EEETTEEE EE: ExpBur :beeeeeeeebbeebeebbeeebbbbbeeebbbbbbbeeeeeeebbbeeebbbbbbbbbbbbbbeeeebbebeeeeebbeebeebbbbebeeeeeebbbbb: queryA 5224:PDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHT:5321 :**************************************************************** *******************: 7l1f_A_1 801:PDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELXXXXXXXXXXXXXXXNTSRYWEPEFYEAMYTPHT: 898 SecStr : HHHHHHHHHEES SGGGSHHHHHHHHHHHHHHT TTTT SSHHHHHHHHHHHHHHHHHHHH --------------- S TTSHHHHHHHT S : ExpBur :beebebbbbbbbbeeeeeeebeebeeebeebbbebbbbeeeeeeeeeebbebbbebbeebeeee---------------eeeeeeeeeebeebbeeee: |