Protein Model on 7l1f_A_1_B_1 (TEMPLATE: 7l1f )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(R1AB_SARS2) A 1 (A) polymer(polypeptide(L)) [832 aa] RNA-directed RNA polymerase :R1AB_SARS2
2 b B 1 (C) polymer(polypeptide(L)) [114 aa] Non-structural protein 8 :R1AB_SARS2 4662L 4663L 4664K 4665Y 4666D 4716T 4718F 4720P 4721L 4722V 4723R 4724K 4728D 4730V 4731P 4732F 4733V 4760F 4763L 4766Y 4767A 4771A 4772M 4773H 4774A 4775A 4776S 4777G 4778N 4779L 4780L 4781L 4784R 4790V 4797V 4839N 4901W 4907Y 4909D 4910S (identity: 100.0 %/92.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7l1f_A_1 identity=92.7%
queryA      4424:YRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYAL:4523
                :*******************                                 *****************                  *************:
7l1f_A_1       1:YRAFDIYNDKVAGFAKFLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETIYNLLKDCPAVAKHDXXXXXXXXXXXXXXXXXXLTKYTMADLVYAL: 100
SecStr          :  EEEEE SS EEEEE   --------------------------------- TTTTTSTTSTTB    ------------------  SS HHHHHHTT:    
ExpBur          :eebbbbeeeebbbbbeeee---------------------------------eebeeebeeeebbeeee------------------eeebbbbbbbbbb:    

queryA      4524:RHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGV:4623
                :****************************************************************************************************:
7l1f_A_1     101:RHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGV: 200
SecStr          :TS  TTS HHHHHHHHHTTS  SSSSSSSS S TTT TTHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTEEEE  GGGB SSS B    S EE  TT   :    
ExpBur          :bebeeeebeebeebbeeeebbeeebbeeeebbbbeebeebeebbeebbeebbebbeebbebbeebeeebbebebebbbbbbebebeeeeebeeeeeeebe:    

queryA      4624:PVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVR:4723
                :****************************************************************************************************:
7l1f_A_1     201:PVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVR: 300
SecStr          :EE HHHHHHHHHHHHHHTTTSSSSBSSS SSS B    TT     HHHHHHHHHHSTT SS   SSSSS  SSSHHHHHHHHHHHHTTTS TTS EE   :    
ExpBur          :bebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebeebbeebbeebbeebeeebebebeebeebebbbbbbbbbbbbbebbeeebbeebee:    
Contact         :                                      bbbbb                                                 b b bbbb

queryA      4724:KIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKE:4823
                :****************************************************************************************************:
7l1f_A_1     301:KIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKE: 400
SecStr          :EEEETTEEEE   EEE SSS EEE S   SB SS  HHHHHHHHH THHHHTTSEE    SSS  EEEESSS          EE HHHHHHHTTTT   S:    
ExpBur          :ebebeeeeeebbbbbbbebbbbbebeeeeeeeeeeeebeebbeebbbeebeeeeeeeebeebebebebbeeeeeeeeebeeeeebeebeebbeeeeeeee:    
Contact         :b   b bbbb                          b  b  bb   bbbbbbbbbbb  b     b      b                          

queryA      4824:GSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYT:4923
                :****************************************************************************************************:
7l1f_A_1     401:GSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYT: 500
SecStr          :SSS S   B     TTHHHHHHGGGGG       SHHHHHHHHHGGGGS S       GGG     S S   BTGGGT  TTHHHHSS HHHHHHHHHHT:    
ExpBur          :eeeeebeeeeeeeeeebebebbeebeebeebbbbbbbbebbbbbbeebbeebebbbbebeeeeeeeeeeebbbbbeeebebeebeeebeeeebeebbeeb:    
Contact         :               b                                                             b     b bb             

queryA      4924:KRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLR:5023
                :****************************************************************************************************:
7l1f_A_1     501:KRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLR: 600
SecStr          :TT     BBB       BSSS      B  HHHHHHHHHHHHHHHHHHTT SSSSB  S  STTTHHHHHHHHHTSS SSEEE     TTSTT   HHHH:    
ExpBur          :bebbbbbbbebeeeeeeeeeeebebebebbbbbbbbbebbbbebeeebeeeeeebbbeeeeeeebbbeebbeebbeeeeebebbbbebbebebbbbbbbb:    

queryA      5024:IMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECL:5123
                :****************************************************************************************************:
7l1f_A_1     601:IMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECL: 700
SecStr          :HHHHHHTT   TTT  HHHHHHHHHHHHHHHTS  BBSSSSEE   SS  SS TTHHHHHHHHHHHHHHHHHHHHHHTS TTT   HHHHHHHHHHHHHH:    
ExpBur          :bbbbbbbbeebeeebeeeeebbbbbbbbbbbbebebbbeebbbebebbbbeebebbeebbbbbbbbbbbbbbbbbbbebbbeebeeeebeebbeebbebb:    

queryA      5124:YRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPY:5223
                :****************************************************************************************************:
7l1f_A_1     701:YRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPY: 800
SecStr          :HT  S  HHHHHHHHHHHHHHEEEEEETTEEEEEEETTTTTTTSS  HHHHHHHHHHTS     TTT   B  SSS  S SSS EE  EEETTEEE  EE:    
ExpBur          :beeeeeeeebbeebeebbeeebbbbbeeebbbbbbbeeeeeeebbbeeebbbbbbbbbbbbbbeeeebbebeeeeebbeebeebbbbebeeeeeebbbbb:    

queryA      5224:PDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHT:5321
                :****************************************************************               *******************:
7l1f_A_1     801:PDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELXXXXXXXXXXXXXXXNTSRYWEPEFYEAMYTPHT: 898
SecStr          :  HHHHHHHHHEES SGGGSHHHHHHHHHHHHHHT TTTT SSHHHHHHHHHHHHHHHHHHHH ---------------  S TTSHHHHHHHT S  :    
ExpBur          :beebebbbbbbbbeeeeeeebeebeeebeebbbebbbbeeeeeeeeeebbebbbebbeebeeee---------------eeeeeeeeeebeebbeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123