Protein Model on 7d4f_D_1_H_1 (TEMPLATE: 7d4f )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(R1AB_SARS2) D 1 (A) polymer(polypeptide(L)) [898 aa] RNA-directed RNA polymerase :R1AB_SARS2
2 b H 1 (A) non-polymer(H3U) 8-(3-(3-aminobenzamido)-4-methylbenzamido)naphthalene-1,3,5-trisulfonic acid 4831H 4940I 4941S 4942A 4943K 4945R 4947R 5228R 5232A 5253S 5254L 5257D (identity: 100.0 %/97.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7d4f_D_1 identity=97.2%
queryA      4398:SFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFR:4497
                :*****************        ***************************************************************************:
7d4f_D_1       7:SFLNRVCGVSAARLTPCXXXXXXXXVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFR: 106
SecStr          :  HHHHHHHS S EEE -------- EEEEEEE SS EEEEEEE  S EEEEEE SSS EEEEEEEEEE  HHHHHHHHHHHHHHTTSTTB  EEEEEE :    
ExpBur          :eeeeebeeebebebeee--------eebbebeeeeebbbbbebeeeeeebbbbeeeeeeeeeebbbbeebeeeebeebeebbeebeebebbbebebbebe:    

queryA      4498:IDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVL:4597
                :*   ************************************************************************************************:
7d4f_D_1     107:IXXXMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVL: 206
SecStr          : --- EEEEEEEEE SSBHHHHHHHHHS  TTS HHHHHHHHHTTSS GGGGGSTTSS TTT TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTEEEE :    
ExpBur          :e---eebbbbbbebbbbbbbbbbbbbbbbeeeebebbeebbeebebbeeebbeeeebbbbbebeebbebbeebbeebbebbeebbebbebbeebbbebbb:    

queryA      4598:TLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDR:4697
                :****************************************************************************************************:
7d4f_D_1     207:TLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDR: 306
SecStr          : GGGBBTTS B   TT EE STT   EE HHHHHHHHHHHHHTTTTSGGGBGGG SSS B    TT    HHHHHHHHHHH TT  S   SSGGG SSHH:    
ExpBur          :bbbbbbbebbbbebeebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebbeebeebbeebbebbebebbbbbeebeebb:    

queryA      4698:CILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNV:4797
                :****************************************************************************************************:
7d4f_D_1     307:CILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNV: 406
SecStr          :HHHHHHHHHHHHTTTS GGG EEEEEEEEETTEEEEEEEEEEETTTEEEE S   SEES   HHHHHHHHHSHHHHHHSSEE   SS SS EEEESSSS :    
ExpBur          :bbbbbbbbbbbbbebbeeebbbebeeebebeeeeeebbbbbbbebbbbbebeeeeeeeeeeeebbebbbebbbbebeeeeeebebeebebebebbeeeee:    

queryA      4798:AFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFP:4897
                :****************************************************************************************************:
7d4f_D_1     407:AFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFP: 506
SecStr          :    B   EE HHHHHHHHHTT   TTSS     B   B TTHHHHHHGGGGG       HHHHHHHHHHHGGGGTT       GGG   S TTS   TG:    
ExpBur          :eeeebeeeeebeebeebbeeeebbeeeeebeeebebeebeeebbbebbbebebbeebbbbbbbbbbbbbbbbebbeebebbbbebeebeeeeeeeebbbb:    
Contact         :                                 b                                                                  

queryA      4898:FNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTV:4997
                :****************************************************************************************************:
7d4f_D_1     507:FNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTV: 606
SecStr          :GGGS  HHHHHHHS HHHHHHHHHHTTTS    EEEEEEE   BSSS  EEEEE  HHHHHHHHHHHHHHHHHHTT  SSSB TT  STTTHHHHHHHHH:    
ExpBur          :beeeeebeebbeebeeeebeebbebbbebbbbbbbbbebeeeeeeeeebebebbbbbbbbbbbbbbbbebbebbeeeeebbbbbebebeebbbeebbeeb:    
Contact         :                                          bbbb b b                                                  

queryA      4998:YSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVN:5097
                :****************************************************************************************************:
7d4f_D_1     607:YSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVN: 706
SecStr          :SSS SSEEEEE   TTHHHH  HHHHHHHHHHHHTT TTT  HHHHHHHHHHHHHHHTS EEE SSEEEE  S   TT TTHHHHHHHHHHHHHHHHHHH:    
ExpBur          :beebeeeebbbbebbebebbbbbbbbbbbbbbbbbbbeeebeeeeebbbbbbbbbbbbbbbbbbeebbbebebbbbebbebbebbbbbbbbbbbbbbbbb:    

queryA      5098:ALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDL:5197
                :****************************************************************************************************:
7d4f_D_1     707:ALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDL: 806
SecStr          :HHHTS GGG   HHHHHHHHHHHHHHHT  S  HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHHTTSS  HHHHHHHHHHHHS    TTS EEE  S:    
ExpBur          :bbbbbbbeebeeeebeebbbebbebbbeeeeeeeebbeebbebbeebbbbbbeeebbbbbbbbebbeeebbbebebbbbbbbbbbbbbbeeeebbeeeeb:    

queryA      5198:TKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSV:5297
                :******************************************************************************************          :
7d4f_D_1     807:TKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELXXXXXXXXXX: 906
SecStr          :SS  S BTTBEEEEEEETTEEEEEEE  HHHHHHHHHEE HHHHH HHHHHHHHHHHHHHHGGGGGSS HHHHHHHHHHHHHHHHHHHT ----------:    
ExpBur          :eebbeebeebebbebebeeeebbbbbbebbebbbbbbbbeeebeeeeeebbeebbebbbebbbbeeeeeeeebebbebbbebbeebeeee----------:    
Contact         :                              b   b                    bb  b                                        

queryA      5298:MLTNDNTSRYWEPEFYEAMYTPHT:5321
                :     *******************:
7d4f_D_1     907:XXXXXNTSRYWEPEFYEAMYTPHT: 930
SecStr          :-----    TTSHHHHHGGGSS  :    
ExpBur          :-----eeeeeeeeeebeebbeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123