Protein Model on 7cyq_A_1_I_1 (TEMPLATE: 7cyq )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(R1AB_SARS2) A 1 (A) polymer(polypeptide(L)) [926 aa] RNA-directed RNA polymerase :R1AB_SARS2
2 b I 1 (G) polymer(polypeptide(L)) [113 aa] Non-structural protein 9 :R1AB_SARS2 4428D 4430Y 4594V 4596V 4598T 4613D 4615I 4616Q 4617T 4618T 4619P 4623V 4624P 4625V 4681Y 4683D 5120Y 5125R 5127R (identity: 100.0 %/100.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7cyq_A_1 identity=100.0%
queryA      4396:AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFK:4495
                :****************************************************************************************************:
7cyq_A_1       4:AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFK: 103
SecStr          :  HHHHHHS SS   EEESSBTTB   EEEEEEEESSS EEEEEEEE SEEEEEEE STT EEEEEEEEEE  HHHHHHHHHHHHHHTT TTB  EEEEE:    
ExpBur          :eeebbeebbeeeeeebeeeeeeeeeeebebbebeeeeebbbbbbbebeebbbbbbeeeeeeeeebbbbbbeeeeebbeebeebbeebeebebbbebebbe:    
Contact         :                                b b                                                                 

queryA      4496:FRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVG:4595
                :****************************************************************************************************:
7cyq_A_1     104:FRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVG: 203
SecStr          :EESSS EEEEEEEEEE SSBHHHHHHHHHS  TTS HHHHHHHHHTTSS GGGGGSSSTT SSS TTHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTEEE:    
ExpBur          :beeeeeeebbbbbbebbebbbbbbbbbbbbbeeeebebbeebbeebebbeeebbeeeebbbbbeeeebbebbbebbeebbebbeebbebbebbeeebbeb:    
Contact         :                                                                                                  b 

queryA      4596:VLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD:4695
                :****************************************************************************************************:
7cyq_A_1     204:VLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD: 303
SecStr          :E  GGGBBSS  B   TT EE STT  EEE HHHHHHHHHHHHHTTGGGGGSBTTS TTS B    TT    HHHHHHHHHHH TT  S   SSGGG  S:    
ExpBur          :ebbbbbbbbebbbbebeebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebbebbeebbeebbebbeeebbbbbeebee:    
Contact         :b b              b bbbbb   bbb                                                       b b            

queryA      4696:DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTN:4795
                :****************************************************************************************************:
7cyq_A_1     304:DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTN: 403
SecStr          :HHHHHHHHHHHHHHTTSS GGG S  EEEEEETTEEEEEE EEEETTTEEEE S   SEES   HHHHHHHHS HHHHHHTSEE   TT  S EEEESSS:    
ExpBur          :bbbbbbbbbbbbbbbebbeeebbbebeeebebeeeeeebbbbbbbebbbbbebeeeeeebeebeeeeebbbebbbbebeeeeeebebeebebebbbbeee:    

queryA      4796:NVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAG:4895
                :****************************************************************************************************:
7cyq_A_1     404:NVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAG: 503
SecStr          :S     B   EE HHHHHHHHHTT S TT S     B   B GGGHHHHHGGGGG       HHHHHHHHHHHHHTT S       TTS   S S S   :    
ExpBur          :eeeeeebeeeeebeebeebbeeeebbeeeeebeeebebeebeeebbbebbbebebbeebbbbbbbbbbbbbbbbbbbeebebbebebeebebeeeeeebb:    

queryA      4896:FPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK:4995
                :****************************************************************************************************:
7cyq_A_1     504:FPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK: 603
SecStr          :TTGGGT  HHHHHHHS HHHHHHHHHHTTSS    EEEEEE    BSS    EEEEE HHHHHHHHHHHHHHHHHHTT SSSSB TT  STTTHHHHHHH:    
ExpBur          :bbbeeeeebeebbeebeeeebeebbebbbebbbbbbbbbebeeebeeeeebebebebbbbbbbbbebbbbebbebbeeeeebbbbbebebeebbbbebbe:    

queryA      4996:TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTAN:5095
                :****************************************************************************************************:
7cyq_A_1     604:TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTAN: 703
SecStr          :HHTSS SSEEEEE   TTTTTS  HHHHHHHHHHHTTT TTTS HHHHHHHHHHHHHHHTS EEEETTEEEE  SS  TTSTTHHHHHHHHHHHHHHHHH:    
ExpBur          :ebbeebeeeebbbbebeebbbbbbbbbbbbbbbbbbbbbeeebeeeeebbbbbbbbbbbbbbbbbbebbbbbbebbbbeebebbebbbbbbbbbbbbbbb:    

queryA      5096:VNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTET:5195
                :****************************************************************************************************:
7cyq_A_1     704:VNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTET: 803
SecStr          :HHHHHTS GGG   HHHHHHHHHHHHHHHT  S  HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHTTTSS  HHHHHHHHHHHHS    TTS EEES:    
ExpBur          :bbbbbbbebeebeeeebbebbbebbebbbeeeeeeeebbeebbebbeebbbbbbeeeebbbbbbeebbeeebbbebebbbbbbbbbbbbbbeeeebbeee:    
Contact         :                        b    b b                                                                    

queryA      5196:DLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMY:5295
                :****************************************************************************************************:
7cyq_A_1     804:DLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMY: 903
SecStr          : TTS  S BTTBEEEEEEETTEEEEEEE  HHHHHHHHHEESTTTSS GGG THHHHHHHHHTSGGGG SSHHHHHHHHHHHHHHHHHHHHHHHHHHHS :    
ExpBur          :ebeebbeebeebebbebebeeeebbbbbbebbebbbbbbbbeeeebeebbebbeebbebbbebbbbeebeeeeebebbebbbebbeebbeeeeeeeeeee:    

queryA      5296:SVMLTNDNTSRYWEPEFYEAMYTPHT:5321
                :**************************:
7cyq_A_1     904:SVMLTNDNTSRYWEPEFYEAMYTPHT: 929
SecStr          :S   S    GGGGSTHHHHGGGSS  :    
ExpBur          :eeeeeeeeeeeeeeeeebeebbeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123