Protein Model on 7cxm_H_1_I_1 (TEMPLATE: 7cxm )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(R1AB_SARS2) H 1 (F) polymer(polypeptide(L)) [596 aa] Helicase :R1AB_SARS2
2 b I 1 (E) polymer(polypeptide(L)) [596 aa] Helicase :R1AB_SARS2 5569H 5570Y 5571V 5572R 5574T (identity: 100.0 %/100.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7cxm_H_1 identity=100.0%
queryA      5325:AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGS:5424
                :****************************************************************************************************:
7cxm_H_1       1:AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGS: 100
SecStr          :  EE TTT  EE EE TTSSS  EE HHHHHHHHTTSS    BSSSB S  STT     GGG EE SSSEE SSS  SS  BSSBTTB S SSSSS    :    
ExpBur          :eebebebbebebbbebbebeeebebbbebbeebbeeeebebbebeeebebebeebeeebbebbebbeeebebeeeeeeebeebbeeeebebeeeeebebe:    

queryA      5425:DNVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYRVTKNSKVQIGEYTF:5524
                :****************************************************************************************************:
7cxm_H_1     101:DNVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYRVTKNSKVQIGEYTF: 200
SecStr          :S HHHHHHHHH  SSSHHHHHHTTSS HHHHHHHHHHHHHHHHHHHHTS  EEEEE   SSEEEEEE TT       SS  EEEE  SSSS     EEEE:    
ExpBur          :eebebbbebeeeebbeeebbeebbebeeebbbbbbbbbebeebeebeebbebbbeeeeeeebbebeeeeeeeebebeeeebbbbeeeeeeeeeebbbbbb:    

queryA      5525:EKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP:5624
                :****************************************************************************************************:
7cxm_H_1     201:EKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP: 300
SecStr          :E  SSSSSEEEEESSS    TT EEE          S SS      SS TT    SSTTGGGHHHHHHHTHHHHSSEEEEE  TTSSTTHHHHHHHHH T:    
ExpBur          :ebbeeeeebbbeeeeeeebeeebebebeeeebeebebebeeeeeeeeeeeebeebeeebeebeebbeebeebbebbbbbbbbbbebbbeebbbbbbebbe:    
Contact         :                                            bbbb b                                                  

queryA      5625:SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIG:5724
                :****************************************************************************************************:
7cxm_H_1     301:SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIG: 400
SecStr          :TS EEEEESSHHHHHHHHTTTTTTS S  EE   SS  SS    SS SSS  SSEEEEEGGG  S   SEEEE  TTT  HHHHHHHHHH   SEEEEEE:    
ExpBur          :ebebbbbbbeeebbebbbeebeeebeeebbbbbbeeebeeebbeeebeeeeebebbbbbbeebeeeebebbbbebbbebebbbbbebbeebebebbbbbb:    

queryA      5725:DPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFL:5824
                :****************************************************************************************************:
7cxm_H_1     401:DPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFL: 500
SecStr          : TTS     TT  SS   GGGS HHHHHHHHS  SS      SSBGGGTTTTTTTSS S    B              S   SSSS   HHHHTTTTTTT:    
ExpBur          :bbbbbeeebebbeeeebebeebbbbbebbeeeeeebebeebebbbbbbbebbbebebeeebebeeeeeebbbbbeebeeeeeeeeebbbeebbebbeebb:    

queryA      5825:TRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRN:5920
                :************************************************************************************************:
7cxm_H_1     501:TRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIPRRN: 596
SecStr          :TT TT SS  EE SSSHHHHHHHHS SS    GGG SS  BS  EE   SSSTTTT HHHHHHHHHSBSS  B     SSGGGSS      SSS  :    
ExpBur          :eebeebeebbbbbbeebbbebbbeebebebebbeebbeeeeeebbbbbbeeeeebeeeeebbbbbbbbebbbbbbbbbeebeeebebeeeebeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123