Protein Model on 7ctt_A_1_D_1 (TEMPLATE: 7ctt )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(R1AB_SARS2) A 1 (A) polymer(polypeptide(L)) [826 aa] RNA-directed RNA polymerase :R1AB_SARS2
2 b D 1 (D) polymer(polypeptide(L)) [28 aa] Non-structural protein 8 :R1AB_SARS2 4807F 4809K (identity: 100.0 %/92.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7ctt_A_1 identity=92.0%
queryA      4423:VYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYA:4522
                :********************                                 *****************                 *************:
7ctt_A_1      31:VYRAFDIYNDKVAGFAKFLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETIYNLLKDCPAVAKHDXXXXXXXXXXXXXXXXXRLTKYTMADLVYA: 130
SecStr          : EEEEEEE SS EEEEEEE ---------------------------------  GGGGSTTSTTB    -----------------   SSBHHHHHHH:    
ExpBur          :eeebbbbeeeebbbbbebee---------------------------------eebbeebeebebbbeee-----------------eeeebbbbbbbbb:    

queryA      4523:LRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSG:4622
                :****************************************************************************************************:
7ctt_A_1     131:LRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSG: 230
SecStr          :HHS  TTSTHHHHHHHTTTTSS GGGSSSTT S SSS TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEE  GGGSBSSS B    S EE  TT  :    
ExpBur          :bbbbeeeebebbeebbeebebbeeebbeeeebbbbbebeebbebbbebbbebbebbeebbebbebbeebbbebebbbbbbbbebbbeebeebeeeeeeeb:    

queryA      4623:VPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLV:4722
                :****************************************************************************************************:
7ctt_A_1     231:VPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLV: 330
SecStr          : EE HHHHHHHHHHHHHTTGGGGGGBGGG TTS B    TT    HHHHHHHHHHH TT  S   SSGGG SSHHHHHHHHHHHHHHTSSS TTS EEEE:    
ExpBur          :ebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebbeebeebbeebbbbbeeebbbbbeebeebbbbbbbbbbbbbbbebbbeebbbbbe:    

queryA      4723:RKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFK:4822
                :****************************************************************************************************:
7ctt_A_1     331:RKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFK: 430
SecStr          :EEEEESSSEEEEEEEEE SSS EEE SS  SEE S  HHHHHHHHH HHHHHTSSEE   TT SS EEEESSSS     B   EE HHHHHHHHTTT S :    
ExpBur          :eebebeeeeeebbbbbbbebbbbbebeeeeeebeeeeebeebbbebbbbebeeeeeebebeebebebebbeeeeeeeeebeeeeebeebeebbeeeebbe:    
Contact         :                                                                                    b b             

queryA      4823:EGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAY:4922
                :****************************************************************************************************:
7ctt_A_1     431:EGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAY: 530
SecStr          :TT S     B   B TTSHHHHHGGGGG       HHHHHHHHHHHHHHT SS      GGG       S   TTTTTT  HHHHHHHS HHHHHHHHHH:    
ExpBur          :eeeebebebebeebeeebbbebbbebebbbebbbbbbbbbbbbbbbbebbeebebbbbebeeeebeeeeeebbbbbeeeeebeebbeebeeeebeebbeb:    

queryA      4923:TKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML:5022
                :****************************************************************************************************:
7ctt_A_1     531:TKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML: 630
SecStr          :HTTS    EEEEEE    BSSS   EEEE  HHHHHHHHHHHTTHHHHHTT  SSSB TT  STTTHHHHHHHHHHTT SSEEEEEE  TTTTTS  HHH:    
ExpBur          :bbebbbbbbbbbebeeebeeeeebebebebbbbbbbbbebbbbebbebbeeeeebbbbbebebbebbbeebbeebbeebeeeebbbbebbebbbbbbbbb:    

queryA      5023:RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYEC:5122
                :****************************************************************************************************:
7ctt_A_1     631:RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYEC: 730
SecStr          :HHHHHHHHHTT TTT  HHHHHHHHHHHHHHHTS EEEETTEEEE  S   TTSTTHHHHHHHHHHHHHHHHHHHHHHTS GGG S HHHHHHHHHHHHH:    
ExpBur          :bbbbbbbbbbbbeeebeeeebbbbbbbbbbbbbbbbbbbebbbbbbebbbbeebebbebbbbbbbbbbbbbbbbbbbbbbbbeebeeeebeebbeebbeb:    

queryA      5123:LYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLP:5222
                :****************************************************************************************************:
7ctt_A_1     731:LYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLP: 830
SecStr          :HHS  S  HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHHHTSS  HHHHHHHHHHTT     TTS EEE  SSS  S SSS B  EEESSSSEEE  :    
ExpBur          :bbeeeeeeeebbebbbebbeebbbbbbebebbbbbbbeebbeebbbbbbebbbbbbbbbbbbbbeeeebbebeeeeebbeebeebbbbebebeeeebbbb:    

queryA      5223:YPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPH:5320
                :**************************************************************                      **************:
7ctt_A_1     831:YPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHXXXXXXXXXXXXXXXXXXXXXXYWEPEFYEAMYTPH: 928
SecStr          :B  HHHHHHHHHEESSSTTS SHHHHHHHHHHHHHHGGGGGSS HHHHHHHHHHHHHHH   ----------------------  STTTTTTTSS  :    
ExpBur          :bbebbebbbbbbbbeeebeeeeeebeebbbebbbebbbbeebeeeeebebbebbbebbeeee----------------------eeeeeebeebbeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123