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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(R1AB_SARS2) | A 1 (A) | polymer(polypeptide(L)) [826 aa] | RNA-directed RNA polymerase :R1AB_SARS2 | |
2 | b | D 1 (D) | polymer(polypeptide(L)) [28 aa] | Non-structural protein 8 :R1AB_SARS2 | 4807F 4809K (identity: 100.0 %/92.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7ctt_A_1 identity=92.0% |
queryA 4423:VYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYA:4522 :******************** ***************** *************: 7ctt_A_1 31:VYRAFDIYNDKVAGFAKFLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETIYNLLKDCPAVAKHDXXXXXXXXXXXXXXXXXRLTKYTMADLVYA: 130 SecStr : EEEEEEE SS EEEEEEE --------------------------------- GGGGSTTSTTB ----------------- SSBHHHHHHH: ExpBur :eeebbbbeeeebbbbbebee---------------------------------eebbeebeebebbbeee-----------------eeeebbbbbbbbb: queryA 4523:LRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSG:4622 :****************************************************************************************************: 7ctt_A_1 131:LRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSG: 230 SecStr :HHS TTSTHHHHHHHTTTTSS GGGSSSTT S SSS TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEE GGGSBSSS B S EE TT : ExpBur :bbbbeeeebebbeebbeebebbeeebbeeeebbbbbebeebbebbbebbbebbebbeebbebbebbeebbbebebbbbbbbbebbbeebeebeeeeeeeb: queryA 4623:VPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLV:4722 :****************************************************************************************************: 7ctt_A_1 231:VPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLV: 330 SecStr : EE HHHHHHHHHHHHHTTGGGGGGBGGG TTS B TT HHHHHHHHHHH TT S SSGGG SSHHHHHHHHHHHHHHTSSS TTS EEEE: ExpBur :ebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebbeebeebbeebbbbbeeebbbbbeebeebbbbbbbbbbbbbbbebbbeebbbbbe: queryA 4723:RKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFK:4822 :****************************************************************************************************: 7ctt_A_1 331:RKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFK: 430 SecStr :EEEEESSSEEEEEEEEE SSS EEE SS SEE S HHHHHHHHH HHHHHTSSEE TT SS EEEESSSS B EE HHHHHHHHTTT S : ExpBur :eebebeeeeeebbbbbbbebbbbbebeeeeeebeeeeebeebbbebbbbebeeeeeebebeebebebebbeeeeeeeeebeeeeebeebeebbeeeebbe: Contact : b b queryA 4823:EGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAY:4922 :****************************************************************************************************: 7ctt_A_1 431:EGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAY: 530 SecStr :TT S B B TTSHHHHHGGGGG HHHHHHHHHHHHHHT SS GGG S TTTTTT HHHHHHHS HHHHHHHHHH: ExpBur :eeeebebebebeebeeebbbebbbebebbbebbbbbbbbbbbbbbbbebbeebebbbbebeeeebeeeeeebbbbbeeeeebeebbeebeeeebeebbeb: queryA 4923:TKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML:5022 :****************************************************************************************************: 7ctt_A_1 531:TKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML: 630 SecStr :HTTS EEEEEE BSSS EEEE HHHHHHHHHHHTTHHHHHTT SSSB TT STTTHHHHHHHHHHTT SSEEEEEE TTTTTS HHH: ExpBur :bbebbbbbbbbbebeeebeeeeebebebebbbbbbbbbebbbbebbebbeeeeebbbbbebebbebbbeebbeebbeebeeeebbbbebbebbbbbbbbb: queryA 5023:RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYEC:5122 :****************************************************************************************************: 7ctt_A_1 631:RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYEC: 730 SecStr :HHHHHHHHHTT TTT HHHHHHHHHHHHHHHTS EEEETTEEEE S TTSTTHHHHHHHHHHHHHHHHHHHHHHTS GGG S HHHHHHHHHHHHH: ExpBur :bbbbbbbbbbbbeeebeeeebbbbbbbbbbbbbbbbbbbebbbbbbebbbbeebebbebbbbbbbbbbbbbbbbbbbbbbbbeebeeeebeebbeebbeb: queryA 5123:LYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLP:5222 :****************************************************************************************************: 7ctt_A_1 731:LYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLP: 830 SecStr :HHS S HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHHHTSS HHHHHHHHHHTT TTS EEE SSS S SSS B EEESSSSEEE : ExpBur :bbeeeeeeeebbebbbebbeebbbbbbebebbbbbbbeebbeebbbbbbebbbbbbbbbbbbbbeeeebbebeeeeebbeebeebbbbebebeeeebbbb: queryA 5223:YPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPH:5320 :************************************************************** **************: 7ctt_A_1 831:YPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHXXXXXXXXXXXXXXXXXXXXXXYWEPEFYEAMYTPH: 928 SecStr :B HHHHHHHHHEESSSTTS SHHHHHHHHHHHHHHGGGGGSS HHHHHHHHHHHHHHH ---------------------- STTTTTTTSS : ExpBur :bbebbebbbbbbbbeeebeeeeeebeebbbebbbebbbbeebeeeeebebbebbbebbeeee----------------------eeeeeebeebbeee: |