[pdbjlvh2]Protein Model on 7bw4_A_1_F

Protein Model on 7bw4_A_1_F_1 (TEMPLATE: 7bw4 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(R1AB_SARS2)	A 1 (A)	polymer(polypeptide(L)) [811 aa]	RNA-directed RNA polymerase :R1AB_SARS2
2	b		F 1 (A)	non-polymer(ZN)	ZINC ION	4879C 4963F 5034H 5037C 5038C (identity: 100.0 %/97.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7bw4_A_1 identity=97.7%

queryA      4423:VYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQR------------:4510
                :********************                                                                                :
7bw4_A_1      22:VYRAFDIYNDKVAGFAKFLK--------------------------------------------------------------------XXXXXXXXXXXX:  53
SecStr          : EEEEEEESSS EEEEEEE --------------------------------------------------------------------------------:    
ExpBur          :eebbebeeeeebbbbbeeee--------------------------------------------------------------------------------:    

queryA      4511:--------------------------------------------------------LTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDW:4554
                :                                                        ********************************************:
7bw4_A_1      54:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDW: 153
SecStr          :--------------------------------------------------------  SSBHHHHHHHHHS  TTS HHHHHHHHHTTSS HHHHHSTTS:    
ExpBur          :--------------------------------------------------------ebebbbbbbbbbbbebeeeebebbeebbeeeebeeeebbeeeeb:    

queryA      4555:YDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLT:4654
                :****************************************************************************************************:
7bw4_A_1     154:YDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLT: 253
SecStr          :S SSSS  SHHHHHHHHHHHHHHHTSSHHHHHHHTTTTEEEE  GGGBBSSS B    S EE  TT  EEE HHHHHHHGGGGTSS SHHHH STTS TT:    
ExpBur          :bbbbeeeebeebbbebbeebbebbeebeebbeeeeeebeebebbbbbbbbebebeeeeeeeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeee:    

queryA      4655:KPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLH:4754
                :****************************************************************************************************:
7bw4_A_1     254:KPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLH: 353
SecStr          :S      SS    HHHHHHHHHHHSTT SS   SSGGG SSHHHHHHHHHHHHHHHTTS TTSSEEEEEEEEETTEEEEEEEEEE SSS EEE S   TT:    
ExpBur          :eeeeeeeeeeeebbeebeebbeebbebbeeebbbebeebeebbbbbbbbbbbbbbbebbbeebbbebeeebebeeeeeebbbbbbbebbbbbebeeeeee:    

queryA      4755:SSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPT:4854
                :****************************************************************************************************:
7bw4_A_1     354:SSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPT: 453
SecStr          :B    HHHHHHHHH SHHHHHSS     SS SS B   SSSS     B   EE HHHHHHHHHTT S SS S     B   B SHHHHHHHHHHHS    :    
ExpBur          :eeeeeeeeebbbebbbbebeeeeeeeebeebebebebbeeeeeeeeebeeeeebeebeeebeeeebeeeeeebeeebebeebebebebebbeebeebbeb:    

queryA      4855:MCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSI:4954
                :****************************************************************************************************:
7bw4_A_1     454:MCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSI: 553
SecStr          :   SHHHHHHHHHHHHHTTT       TTS     TTS   TTTTTS  HHHHHHHS HHHHHHHHHHHTT     EEEEEE  S BSSS   EEEE  H:    
ExpBur          :bbbbbbbbbbbbbbbebbeebeebebebeeeeeeeeeeebbbbbeeeeebeebbeebeeeebeebbebbeebbbbbbbbbebeeeeeeeeebebebbbbb:    
Contact         :                        b                                                                           

queryA      4955:CSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV:5054
                :****************************************************************************************************:
7bw4_A_1     554:CSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV: 653
SecStr          :HHHHHHHHHHHHHHHHHHT SSSSB  S  STTTHHHHHHHHHHTT SSEEEE    TTHHHH  HHHHHHHHHHHHHT SSS  HHHHHHHHHHHHHHH:    
ExpBur          :bbbbbbbbbbbebbeebbeeeeebbbbeeeebebbbeebbeebbeebeeeebbbbebeebebbbbbbbbbbbbbbbbbbbeeebeeeebbbbbbbbbbbb:    
Contact         :        b                                                                      b  bb                

queryA      5055:LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDA:5154
                :****************************************************************************************************:
7bw4_A_1     654:LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDA: 753
SecStr          :TS EEE SS EEE  S   SSSHHHHHHHHHHHHHHHHHHHHHHHHSS TTS   SHHHHHHHHHHHHHHS SS  HHHHHHHHHHHHHHEEEEEETTEE:    
ExpBur          :bbbbbbbebbbbebebbbbeeeebbebbbbbbbbbbbbbbbbbbbbeebbeebeeeebbebbbebbeebbeeeeeeeebbeebbebbeebbbbbbeebeb:    

queryA      5155:VVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSL:5254
                :****************************************************************************************************:
7bw4_A_1     754:VVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSL: 853
SecStr          :EEEEEHHHHHHTSS  HHHHHHHHHHHHS    GGG  EES SSS  S BTTBEEEEEE SS EEEEEE  HHHHHHHHHEE SSSSS HHHHHHHHHHH:    
ExpBur          :bbbbbbebbeeebbbebebbbbbbbbbbbbbbeeeebbebeebeebbeebeebebbebeeeeeebbbbbbebbebbbbbbbbeeebeeeeeebbeebbeb:    

queryA      5255:AIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPH:5320
                :*********************************                   **************:
7bw4_A_1     854:AIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELXXXXXXXXXXXXXXXXXXXYWEPEFYEAMYTPH: 919
SecStr          :HHHTSGGGGSS HHHHHHHHHHHHHHHHHHHH -------------------  STHHHHGGGS  :    
ExpBur          :bbebbbbeeeeeeeebebbebbbebbeebeeee-------------------eeeeeebeebbeee:

Protein Model on 7bw4_A_1_F_1 (TEMPLATE: 7bw4 )

Input Residue Numbers for Focused Sites