Protein Model on 7bv2_A_1_E_1 (TEMPLATE: 7bv2 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(R1AB_SARS2) A 1 (A) polymer(polypeptide(L)) [834 aa] RNA-directed RNA polymerase :R1AB_SARS2
2 b E 1 (T) polymer(polyribonucleotide) Templete 4888N 4892K 4893S 4899N 4933Q 4935N 4937K 4949V 4950A 4951G 4952V 4961R 4969K 4972A 4982G 4984S 4986F 4987Y 5074S 5075G 5076D 5077A 5081Y 5256I 5312F 5316M (identity: 100.0 %/92.8 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7bv2_A_1 identity=92.8%
queryA      4423:VYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYA:4522
                :********************                                 *****************                 *************:
7bv2_A_1      32:VYRAFDIYNDKVAGFAKFLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETIYNLLKDCPAVAKHDXXXXXXXXXXXXXXXXXRLTKYTMADLVYA: 131
SecStr          : EEEEEEE SS EEEEEEE --------------------------------- GGGGGTTTSTTB    -----------------   S BHHHHHHH:    
ExpBur          :eebbbbeeeeebbbbbebee---------------------------------eebbeebeebebbbeee-----------------eeeebbbbbbbbb:    

queryA      4523:LRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSG:4622
                :****************************************************************************************************:
7bv2_A_1     132:LRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSG: 231
SecStr          :HHS  TTS HHHHHHHHHTTSS GGGGGSTTTT TTT TTHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTEEEE  GGGBBTT  B   TT EE STT  :    
ExpBur          :bbbbeeeebeebeebbbebebbeeebbeeeebbbbbebeebbebbbebbeebbebbeebbebbebbeebbbebebbbbbbbbebbbebbeebeeeeeeeb:    

queryA      4623:VPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLV:4722
                :****************************************************************************************************:
7bv2_A_1     232:VPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLV: 331
SecStr          :EEE HHHHHHHHHHHHHTTGGGGGGBGGG TTS B    TT    HHHHHHHHHHH TT  S   SSGGG SSHHHHHHHHHHHHHHTTTS GGGSEEEE:    
ExpBur          :ebebbbbbbbbbbbbbbbebbebbebeeeeeeeeeeeeeeeeeebbeebeebbeebbebbeeebbbbbeebeebbbbbbbbbbbbbbbebbeeebbbebe:    

queryA      4723:RKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFK:4822
                :****************************************************************************************************:
7bv2_A_1     332:RKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFK: 431
SecStr          :EEEEETTEEEEEEEEEEETTTEEEE S   SEES   HHHHHHHHH HHHHHHHSEE   SS SS EEEESSSS     B   EE HHHHHHHHHTTTT :    
ExpBur          :eebebeeeeeebbbbbbbebbbbbebeeeeeeeeebeebeebbeebbbbebeeeeeebebeebebebebbeeeeeeeeebeeeeebeebeebbeeeebee:    

queryA      4823:EGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAY:4922
                :****************************************************************************************************:
7bv2_A_1     432:EGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAY: 531
SecStr          :TT S     B   B TTHHHHHHGGGGG       HHHHHHHHHHHGGGGTT       GGG   S SSSB  TTGGGT BHHHHHHHS HHHHHHHHHH:    
ExpBur          :eebebeeebebeebeeebbbebbbebebbeebbbbbbbbbbbbbbbbebbeebebbbbebeebeeeebeeebbbbbeeebebeebbeebeeeebeebbeb:    
Contact         :                                                                 b   bb     b                       

queryA      4923:TKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML:5022
                :****************************************************************************************************:
7bv2_A_1     532:TKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML: 631
SecStr          :TTTS    EEEEEE    BSS    EEEE  HHHHHHHHHHHHHHHHHHHH  SSSB TT  STTTHHHHHHHHHTTT SSEEEEE   TTHHHH  HHH:    
ExpBur          :bbebbbbbbbebebeeebeeeeebebebebbbbbbbbbebbbbebbeebeeeeeebbbbeeeeeebbbbebbeebbeebeeeebbbbebeebebbbbbbb:    
Contact         :          b b b           bbbb        b       b  b         b b bb                                   

queryA      5023:RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYEC:5122
                :****************************************************************************************************:
7bv2_A_1     632:RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYEC: 731
SecStr          :HHHHHHHHGGG TTT  HHHHHHHHHHHHHHHTS EEE SSEEEE  S   TTSTTHHHHHHHHHHHHHHHHHHHHHHTS GGG   HHHHHHHHHHHHH:    
ExpBur          :bbbbbbbbbbbbeeebeeeebbbbbbbbbbbbbbbbbbbeebbbbbebbbbeebebbebbbbbbbbbbbbbbbbbbbbebebeebeeeebeebbbebbeb:    
Contact         :                                                   bbbb   b                                         

queryA      5123:LYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLP:5222
                :****************************************************************************************************:
7bv2_A_1     732:LYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLP: 831
SecStr          :HHT  S  HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHHTTSS  HHHHHHHHHHHSS    GGG EEE  TTS  S BTTBEEEEEEETTEEEEEE:    
ExpBur          :bbeeeeeeeebbeebbebbeebbbbbbebeebbbbbbbebbeeebbbebebbbbbbbbbbbbbbeeeebbeeeebeebbeebeebebbebebeeeebbbb:    

queryA      5223:YPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHT:5321
                :*****************************************************************               *******************:
7bv2_A_1     832:YPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELXXXXXXXXXXXXXXXNTSRYWEPEFYEAMYTPHT: 930
SecStr          :E  HHHHHHHHHEES GGGGSHHHHHHHHHHHHHHHGGGGGSS HHHHHHHHHHHHHHHHHHHH --------------- TT TTSHHHHHGGGSS  :    
ExpBur          :bbebbebbbbbbbbeeeeeeebeebbeebbebbbebbbbeeeeeeebbebbebbbebbeebeeee---------------eeeeeeeeeebeebbbeee:    
Contact         :                                 b                                                       b   b

Input Residue Numbers for Focused Sites

ex) 2,15,123