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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(R1AB_SARS2) | A 1 (A) | polymer(polypeptide(L)) [834 aa] | RNA-directed RNA polymerase :R1AB_SARS2 | |
2 | b | D 1 (P) | polymer(polyribonucleotide) | Primer | 4891D 4905R 5151S 5152D 5205C 5206S 5207Q 5228R 5232A 5241K 5246L 5250R 5253S 5254L 5257D (identity: 100.0 %/92.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7bv2_A_1 identity=92.8% |
queryA 4423:VYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYA:4522 :******************** ***************** *************: 7bv2_A_1 32:VYRAFDIYNDKVAGFAKFLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETIYNLLKDCPAVAKHDXXXXXXXXXXXXXXXXXRLTKYTMADLVYA: 131 SecStr : EEEEEEE SS EEEEEEE --------------------------------- GGGGGTTTSTTB ----------------- S BHHHHHHH: ExpBur :eebbbbeeeeebbbbbebee---------------------------------eebbeebeebebbbeee-----------------eeeebbbbbbbbb: queryA 4523:LRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSG:4622 :****************************************************************************************************: 7bv2_A_1 132:LRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSG: 231 SecStr :HHS TTS HHHHHHHHHTTSS GGGGGSTTTT TTT TTHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTEEEE GGGBBTT B TT EE STT : ExpBur :bbbbeeeebeebeebbbebebbeeebbeeeebbbbbebeebbebbbebbeebbebbeebbebbebbeebbbebebbbbbbbbebbbebbeebeeeeeeeb: queryA 4623:VPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLV:4722 :****************************************************************************************************: 7bv2_A_1 232:VPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLV: 331 SecStr :EEE HHHHHHHHHHHHHTTGGGGGGBGGG TTS B TT HHHHHHHHHHH TT S SSGGG SSHHHHHHHHHHHHHHTTTS GGGSEEEE: ExpBur :ebebbbbbbbbbbbbbbbebbebbebeeeeeeeeeeeeeeeeeebbeebeebbeebbebbeeebbbbbeebeebbbbbbbbbbbbbbbebbeeebbbebe: queryA 4723:RKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFK:4822 :****************************************************************************************************: 7bv2_A_1 332:RKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFK: 431 SecStr :EEEEETTEEEEEEEEEEETTTEEEE S SEES HHHHHHHHH HHHHHHHSEE SS SS EEEESSSS B EE HHHHHHHHHTTTT : ExpBur :eebebeeeeeebbbbbbbebbbbbebeeeeeeeeebeebeebbeebbbbebeeeeeebebeebebebebbeeeeeeeeebeeeeebeebeebbeeeebee: queryA 4823:EGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAY:4922 :****************************************************************************************************: 7bv2_A_1 432:EGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAY: 531 SecStr :TT S B B TTHHHHHHGGGGG HHHHHHHHHHHGGGGTT GGG S SSSB TTGGGT BHHHHHHHS HHHHHHHHHH: ExpBur :eebebeeebebeebeeebbbebbbebebbeebbbbbbbbbbbbbbbbebbeebebbbbebeebeeeebeeebbbbbeeebebeebbeebeeeebeebbeb: Contact : b b queryA 4923:TKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML:5022 :****************************************************************************************************: 7bv2_A_1 532:TKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML: 631 SecStr :TTTS EEEEEE BSS EEEE HHHHHHHHHHHHHHHHHHHH SSSB TT STTTHHHHHHHHHTTT SSEEEEE TTHHHH HHH: ExpBur :bbebbbbbbbebebeeebeeeeebebebebbbbbbbbbebbbbebbeebeeeeeebbbbeeeeeebbbbebbeebbeebeeeebbbbebeebebbbbbbb: queryA 5023:RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYEC:5122 :****************************************************************************************************: 7bv2_A_1 632:RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYEC: 731 SecStr :HHHHHHHHGGG TTT HHHHHHHHHHHHHHHTS EEE SSEEEE S TTSTTHHHHHHHHHHHHHHHHHHHHHHTS GGG HHHHHHHHHHHHH: ExpBur :bbbbbbbbbbbbeeebeeeebbbbbbbbbbbbbbbbbbbeebbbbbebbbbeebebbebbbbbbbbbbbbbbbbbbbbebebeebeeeebeebbbebbeb: queryA 5123:LYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLP:5222 :****************************************************************************************************: 7bv2_A_1 732:LYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLP: 831 SecStr :HHT S HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHHTTSS HHHHHHHHHHHSS GGG EEE TTS S BTTBEEEEEEETTEEEEEE: ExpBur :bbeeeeeeeebbeebbebbeebbbbbbebeebbbbbbbebbeeebbbebebbbbbbbbbbbbbbeeeebbeeeebeebbeebeebebbebebeeeebbbb: Contact : bb bbb queryA 5223:YPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHT:5321 :***************************************************************** *******************: 7bv2_A_1 832:YPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELXXXXXXXXXXXXXXXNTSRYWEPEFYEAMYTPHT: 930 SecStr :E HHHHHHHHHEES GGGGSHHHHHHHHHHHHHHHGGGGGSS HHHHHHHHHHHHHHHHHHHH --------------- TT TTSHHHHHGGGSS : ExpBur :bbebbebbbbbbbbeeeeeeebeebbeebbebbbebbbbeeeeeeebbebbebbbebbeebeeee---------------eeeeeeeeeebeebbbeee: Contact : b b b b b bb b |