[pdbjlvh2]Protein Model on 7bv1_A_1_D

Protein Model on 7bv1_A_1_D_1 (TEMPLATE: 7bv1 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(R1AB_SARS2)	A 1 (A)	polymer(polypeptide(L)) [836 aa]	RNA-directed RNA polymerase :R1AB_SARS2
2	b		D 1 (D)	polymer(polypeptide(L)) [99 aa]	Non-structural protein 8 :R1AB_SARS2	4809K (identity: 100.0 %/92.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7bv1_A_1 identity=92.7%

queryA      4423:VYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYA:4522
                :********************                                 *****************                **************:
7bv1_A_1      32:VYRAFDIYNDKVAGFAKFLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETIYNLLKDCPAVAKHDXXXXXXXXXXXXXXXXQRLTKYTMADLVYA: 131
SecStr          :  EEEEEE SS EEEEEE  --------------------------------- GGGGGTTTSTTB    ----------------    S BHHHHHHH:    
ExpBur          :eeebebeeeeebbbbbebee---------------------------------eebbeebeebebbbeee----------------eeeeebbbbbbbbb:    

queryA      4523:LRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSG:4622
                :****************************************************************************************************:
7bv1_A_1     132:LRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSG: 231
SecStr          :HHS  SSS HHHHHHHHHTTSS GGGGGSSS S SSS TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTEEEE  GGGBBTTS B    S EE STT  :    
ExpBur          :bbebeeeebebbeebbbebebbeeebbeeeebbbbeeeeebbebbeebbeebbebbeebbebbebbeebbbebbbbbbbbbbebbbeebeebeeeeeeeb:    

queryA      4623:VPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLV:4722
                :****************************************************************************************************:
7bv1_A_1     232:VPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLV: 331
SecStr          :EEE HHHHHHHTHHHHHTTGGGGGGBTTS TTS B    TT    HHHHHHHHHHH TT  S   SSGGG  SHHHHHHHHHHHHHHTTSS GGG EEEE:    
ExpBur          :ebebbbbbbbbbbbbbbbebbebbebeeeeeeeeeeeeeeeeeebbebbeebbeebbebbeeebbbbbeebeebbbbbbbbbbbbbbbebbbeebbbbbe:    

queryA      4723:RKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFK:4822
                :****************************************************************************************************:
7bv1_A_1     332:RKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFK: 431
SecStr          :EEEEETTEEEEEEEEEEETTTEEE  SS  SEE S  HHHHHHHTTSHHHHHHHSEE   SS  S EEEESSSS     B   EE HHHHHHHHHTT S :    
ExpBur          :eebebeeeeeebbbbbbbebbbbbebeeeeeebeeeeeeeebbbebbbbebeeeeeeeebeebebebebbeeeeeeeeebeeeeebeebeeebeeeebee:    
Contact         :                                                                                      b             

queryA      4823:EGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAY:4922
                :****************************************************************************************************:
7bv1_A_1     432:EGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAY: 531
SecStr          :TT S     B   B TTHHHHHHGGGGG       HHHHHHHHHHHHHHTTTS      STT       S   TTTTTS  HHHHHHHS HHHHHHHHHH:    
ExpBur          :eebebeeebebeebebebebebbbbbebbeebbbbbbbbbbbbbbbbebbeebeebbbebeebeeeeeeeebbbbbeeeeebeebbeebeeeebeebbeb:    

queryA      4923:TKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML:5022
                :****************************************************************************************************:
7bv1_A_1     532:TKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML: 631
SecStr          :HHHS    EEEEEE    BSS    EEEE  HHHHHHHHHHHHHHHHHHTT SSSSB TT  STTTHHHHHHHHHHSS SSEEEEE   TTHHHH  HHH:    
ExpBur          :bbebbbbbbbebebeebbbeeeebebebbbbbbbbbbbebbbbebbebbeeeeebbbbbebebebbbbeebbeebbeebeeeebbbbebeebebbbbbbb:    

queryA      5023:RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYEC:5122
                :****************************************************************************************************:
7bv1_A_1     632:RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYEC: 731
SecStr          :HHHHHHHHTTT SSSS HHHHHHHHHHHHHHHTS EEEETTEEEE  S   TT TTHHHHHHHHHHHHHHHHHHHHHHSS TTT   HHHHHHHHHHHHH:    
ExpBur          :bbbbbbbbbbbbeeebeeeebbbbbbbbbbbbbbbbbbbebbbbbbebbbbeebebbebbbbbbbbbbbbbbbbbbbbebebeebeeeebeebbbebbeb:    

queryA      5123:LYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLP:5222
                :****************************************************************************************************:
7bv1_A_1     732:LYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLP: 831
SecStr          :HHT  S  HHHHHHHHHHHHHHEEEEE SS EEEEEEHHHHTTTSS  HHHHHHHHHHHHS    TTS EEES TTS  S BTTBEEEEEEETTEEEEEE:    
ExpBur          :bbeeeeeeeebbeebbebbeebbbbbbebebbbbbbbeebbeebbbbebebbbbbbbbbbbbbbeeeebbebeebeebbeebeebebbebebeeeebbbb:    

queryA      5223:YPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTV:5322
                :*****************************************************************               ******************* :
7bv1_A_1     832:YPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELXXXXXXXXXXXXXXXNTSRYWEPEFYEAMYTPHTX: 931
SecStr          :E  HHHHHHHHHEE SSSTT SHHHHHHHHHHHHHHGGGGGSS HHHHHHHHHHHHHHHHHHHH ---------------  S  SSTHHHHGGGSTT -:    
ExpBur          :bbebbebbbbbbbbeeebeeeeeebbebbbebbbebbbbeeeeeeeebebbebbbebbeebeeee---------------eeeeeeeeebbeebbeeee-:    

queryA      5323:LQ:5324
                : *:
7bv1_A_1     932:XQ: 933
SecStr          :- :    
ExpBur          :-e:

Protein Model on 7bv1_A_1_D_1 (TEMPLATE: 7bv1 )

Input Residue Numbers for Focused Sites