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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(R1AB_SARS2) | A 1 (A) | polymer(polypeptide(L)) [814 aa] | SARS-CoV-2 RNA-dependent RNA polymerase nsp12 :R1AB_SARS2 | |
2 | b | E 1 (T) | polymer(polyribonucleotide) | RNA (5'-R(P*UP*GP*CP*AP*CP*UP*GP*CP*GP*UP*AP*G)-3') | 4888N 4892K 4893S 4899N 4903K 4933Q 4935N 4937K 4949V 4950A 4951G 4961R 4969K 4972A 4982G 4984S 4986F 4987Y 5074S 5075G 5076D 5077A 5081Y 5249E 5252V 5253S 5306R 5307Y 5316M (identity: 100.0 %/97.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7b3d_A_1 identity=97.8% |
queryA 4423:VYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQ-------------:4509 :******************** : 7b3d_A_1 34:VYRAFDIYNDKVAGFAKFLK-------------------------------------------------------------------XXXXXXXXXXXXX: 66 SecStr : EEEEEEESSS EEEEEEE --------------------------------------------------------------------------------: ExpBur :eeebebeeeeebbbbbebee--------------------------------------------------------------------------------: queryA 4510:------------------------------------------------------RLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWY:4555 : **********************************************: 7b3d_A_1 67:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWY: 166 SecStr :------------------------------------------------------ SSBHHHHHHHHHS BTTB HHHHHHHHHTTSS HHHHHSTT S: ExpBur :------------------------------------------------------eebebbbbbbbbbbbbbeeeebeebeebbeebebbeeebbeeeebb: queryA 4556:DFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTK:4655 :****************************************************************************************************: 7b3d_A_1 167:DFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTK: 266 SecStr : TTT TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEE B GGGBBTTS B SS EE STT B HHHHHHHHHHHHHHTGGGGGGBGGG SSS: ExpBur :bbbebeebbebbeebbeebbebbbebbebbeebeeebbebbbbbbbbbbebebeeeeeeeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeee: queryA 4656:PYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHS:4755 :************************************************************************************************** : 7b3d_A_1 267:PYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLXX: 366 SecStr : B TT HHHHHHHHHHHSTT S SSGGG SSHHHHHHHHHHHHHHHTTS GGGSEEEEEEEEETTEEEEEEEEEEETTTEEEE TT --: ExpBur :eeeeeeeeeeebbebbeebbeebbebbeeebbbbbeebeebbbbbbbbbbbbbbbebbeeebbbebeeebeeeeeeeebbbbbbbebbbbbebeeeee--: queryA 4756:SRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTM:4855 : *************************************************************************************************: 7b3d_A_1 367:XXXSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTM: 466 SecStr :--- HHHHHHHHH HHHHHHHSEE TT SSEEEEESSSS B EE HHHHHHHHHTT S TT S B B TTHHHHHHHGGGG : ExpBur :---eeeeebbeebbbbebeeebeebebeebebebebbeeeeeeeeebeeeeebeebeebbeeeebbeeebebeeebebeeeeeebbbebbbebebbbebb: queryA 4856:CDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSIC:4955 :****************************************************************************************************: 7b3d_A_1 467:CDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSIC: 566 SecStr : HHHHHHHHHHHHHTTSS GGG S SSSB TTGGGT BHHHHHHHS HHHHHHHHHHHTTS EEEEEE BSSS EEEE HH: ExpBur :bbbbbbbbbbbbbbebbeebebbebebeebebeeeeeebbbbbeeeeebeebbeebeeeebeebbebbbebbbbbbbbbeeeeebbeeeebebebebbbb: Contact : b bb b b b b b bbb queryA 4956:STMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL:5055 :****************************************************************************************************: 7b3d_A_1 567:STMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL: 666 SecStr :HHHHHHHHHHHHHHHHHT SSSB TT STTTHHHHHHHHHHTT SSEEEEEE TTHHHH HHHHHHHHHHHHGGGTTTS HHHHHHHHHHHHHHTT: ExpBur :bbbbbebbbbebbebbeeeeebbbbbebeebebbbeebbeebbeebeeeebbbbebeebebbbbbbbbbbbbbbbbbbbeeebeeeebbbbbbbbbbbbb: Contact : b b b b b bb queryA 5056:SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAV:5155 :****************************************************************************************************: 7b3d_A_1 667:SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAV: 766 SecStr :S EEEETTEEEE S TTSTTHHHHHHHHHHHHHHHHHHHHHHHS SSS HHHHHHHHHHHHHHHT S HHHHHHHHHHHHHHEEEEEETTEEE: ExpBur :bbbbbbebbbbebebbbbeebebbebbbbbbbbbbbbbbbbbbbbbbebeebeeeebeebbbebbebbbeeeeeeeebbeebeebbeebbbbbbebebbb: Contact : bbbb b queryA 5156:VCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLA:5255 :****************************************************************************************************: 7b3d_A_1 767:VCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLA: 866 SecStr :EEEEHHHHHTTSS HHHHHHHHHHTT GGG EEES TTT S BTTEEEEEEEETTEEEEEEEE HHHHHHHHHEESSGGGSSSTHHHHHHHHHH: ExpBur :bbbbeebbeeebbbeeebbbbbbbbbbbbbbeeeebbebeeeeebbeebeebebbebebeeeebbbbbbebbebbbbbbbbeeeeeeeeeebbeebbebb: Contact : b bb queryA 5256:IDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHT:5321 :********************************* ********************: 7b3d_A_1 867:IDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTXXXXXXXXXXXXXDNTSRYWEPEFYEAMYTPHT: 932 SecStr :HHHGGGGGSSSHHHHHHHHHHHHHHHHHHHHH ------------- TTHHHHSTHHHHHHTSTT : ExpBur :bebbbbeebeeeebbebbebbbebbeebeeeee-------------eebeeebeeebbeebbeeee: Contact : bb b |