Protein Model on 7aap_A_1_E_1 (TEMPLATE: 7aap )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(R1AB_SARS2) A 1 (A) polymer(polypeptide(L)) [911 aa] Non-structural protein 12 :R1AB_SARS2
2 b E 1 (P) polymer(polyribonucleotide) RNA (5'-R(P*UP*UP*AP*AP*GP*UP*UP*AP*U)-3') 4891D 4905R 4937K 5150L 5151S 5152D 5205C 5206S 5207Q 5228R 5232A 5241K 5250R 5253S 5254L 5257D (identity: 100.0 %/98.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7aap_A_1 identity=98.4%
queryA      4396:AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFK:4495
                :****************************************************************************************************:
7aap_A_1       4:AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFK: 103
SecStr          : HHHHHHHH SS  EEEESSSSS  EEEEEEEEEESSS EEEEEEEEEEE  EEEE GGG EEEEEEEE    HHHHHHHHHHHHHHTT TTB  EEEEE:    
ExpBur          :eeebbeebbeeeebebeeeeeeeeeeebebbbbeeeeebbbbbebebeebbbbbbeeeeeeeeebbbbbbeeeeebbeebeebbeebeebebbbebbbbe:    

queryA      4496:FRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVG:4595
                :****************************************************************************************************:
7aap_A_1     104:FRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVG: 203
SecStr          :E SSSS EEEEEEEEE SSBHHHHHHHHHT  SSS HHHHHHHHHTTSS GGGGGSTTSS TTT TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTEEE:    
ExpBur          :eeeeeeeebbbbbbebbbbbbbbbbbbbbbbeeeebebbeebbeebebbeeebbeeeebbbbbebeebbebbeebbeebbebbeebbebbebbeebbbeb:    

queryA      4596:VLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD:4695
                :****************************************************************************************************:
7aap_A_1     204:VLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD: 303
SecStr          :E  GGGBBTTS B   TT EE STT   EE HHHHHHHHHHHHHTTGGGGGGBGGG TTS B    TT    HHHHHHHHHHH TT  S   SSGGG SS:    
ExpBur          :ebbbbbbbbebbbbebeebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebbeebeebbeebbebbeeebbbbbeebee:    

queryA      4696:DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTN:4795
                :****************************************************************************************************:
7aap_A_1     304:DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTN: 403
SecStr          :HHHHHHHHHHHHHHHTTS GGGSEEEEEEEEETTEEEEEEEEEEETTTEEEE SS  SEES   HHHHHHHHH HHHHHHHSEE   SS  S EEEESSS:    
ExpBur          :bbbbbbbbbbbbbbbebbeeebbbebeeebebeeeeeebbbbbbbebbbbbebeeeeeeeeebeebeebbeebbbbebeeeeeebebeebebebebbeee:    

queryA      4796:NVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAG:4895
                :****************************************************************************************************:
7aap_A_1     404:NVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAG: 503
SecStr          :S     B   EE HHHHHHHHHTT S TT S     B   B TTHHHHHHGGGGG       HHHHHHHHHHHHHHTTT       GGG   S SSSB  :    
ExpBur          :eeeeeebeeeeebeebeebbeeeebbeeeeebeeebebeeeeeebbbebbbebebbeebbbbbbbbbbbbbbbbebbeebebbebebeebebeeeeeebb:    
Contact         :                                                                                               b    

queryA      4896:FPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK:4995
                :****************************************************************************************************:
7aap_A_1     504:FPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK: 603
SecStr          :TTGGGT BHHHHHHHS HHHHHHHHHHTTTS    EEEEEEE   BSSS  EEEEE  HHHHHHHHHHHHHHHHHHHT  SSSB TT  STTTHHHHHHH:    
ExpBur          :bbbeeeeebeebbeebeeeebeebbebbbebbbbbbbbbebeeebbeeeebebebebbbbbbbbbebbbbebbeebeeeeebbbbbeeebeebbbeebbe:    
Contact         :         b                               b                                                          

queryA      4996:TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTAN:5095
                :****************************************************************************************************:
7aap_A_1     604:TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTAN: 703
SecStr          :HHTSS SSEEEEEE  TTHHHH  HHHHHHHHHHHGGG TTTS HHHHHHHHHHHHTTTTS EEEETTEEEE  SS  TTSTTHHHHHHHHHHHHHHHHH:    
ExpBur          :ebbeebeeeebbbbebbebebbbbbbbbbbbbbbbbbbbeeebeeeeebbbbbbbbbbbbbbbbbbeebbbbbebbbbeebebbebbbbbbbbbbbbbbb:    

queryA      5096:VNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTET:5195
                :****************************************************************************************************:
7aap_A_1     704:VNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTET: 803
SecStr          :HHHHHTS TTT   HHHHHHHHHHHHHHHT  S  HHHHHHHHHHHHHHEEEEE SS EEEEEEHHHHHTTSS  HHHHHHHHHHHSS    GGG EEE :    
ExpBur          :bbbbbbbbbeebeeeebbebbeebbebbbeeeeeeeebbeebbebbeebbbbbbebeebbbbbbeebbeeebbbebebbbbbbbbbbbbbbeeeebbebe:    
Contact         :                                                      bbb                                           

queryA      5196:DLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMY:5295
                :********************************************************************************************        :
7aap_A_1     804:DLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELXXXXXXXX: 903
SecStr          : SSS  S BTTBEEEEEEETTEEEEEEE  HHHHHHHHHEES SGGGSHHHHHHHHHHHHHHHGGGGGSSSHHHHHHHHHHHHHHHHHHH  --------:    
ExpBur          :ebeebbeebeebbbbebebeeeebbbbbbebbebbbbbbbbeeeeeeebeebbebbbebbbebbbbeebeeeeebebbebbbebbeebeeee--------:    
Contact         :         bbb                    b   b        b        b  bb  b                                      

queryA      5296:SVMLTNDNTSRYWEPEFYEAMYTPHT:5321
                :       *******************:
7aap_A_1     904:XXXXXXXNTSRYWEPEFYEAMYTPHT: 929
SecStr          :------- GGGGSSTHHHHTTTSS  :    
ExpBur          :-------eeeeeeeeeebeebbeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123