Protein Model on 6xez_A_1_H_1 (TEMPLATE: 6xez )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(R1AB_SARS2) A 1 (A) polymer(polypeptide(L)) [926 aa] RNA-directed RNA polymerase :R1AB_SARS2
2 b H 1 (T) polymer(polyribonucleotide) Template RNA 4888N 4892K 4893S 4935N 4951G 4961R 4969K 4982G 4984S 4986F 4987Y 5074S 5075G 5076D 5077A 5079T 5081Y 5249E 5306R 5307Y 5316M (identity: 100.0 %/100.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6xez_A_1 identity=100.0%
queryA      4396:AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFK:4495
                :****************************************************************************************************:
6xez_A_1       4:AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFK: 103
SecStr          : HHHHHHHHTTS    EESSSSS    EEE  EEESSS EEE  EEE S   EEEEEGGGEEEEEE    B  HHHHHHHHHHHHHHTTSSSS    EEE:    
ExpBur          :eeebeeebbeeeeeebeeebeeeeeeebebbebeeeeebbbbbebebeebbbbbbbeeeeeeeebbbbbbeeeeebbeebeebbeebeebebbbebebbe:    

queryA      4496:FRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVG:4595
                :****************************************************************************************************:
6xez_A_1     104:FRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVG: 203
SecStr          :EESSSSEEEEE   SB SSBHHHHHHHHHS  TTS TTHHHHHHHTTSS GGGGGSSS S SSS TTHHHHHGGGHHHHHHHHHHHHHHHHHHHTTTEEE:    
ExpBur          :eeeeeeeebbbbbbebbebbbbbbbbbbbbbeeeebebbeebbeebebbeeebbeeeebebbbeeeebbebbeebbeebbebbeebbebbebbeeebbeb:    

queryA      4596:VLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD:4695
                :****************************************************************************************************:
6xez_A_1     204:VLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD: 303
SecStr          :E  GGG BTTS     TT EE STT  EEE TTTTTTSTTHHHHTTTTGGGSBGGG SSS B    SS    HHHHHHHHHHHS S  S   SSGGG  S:    
ExpBur          :ebebbbbbbebbbbbbeebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebeeebeebbeebbeebeeebebebeebee:    

queryA      4696:DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTN:4795
                :****************************************************************************************************:
6xez_A_1     304:DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTN: 403
SecStr          :TTTHHHHHHHHHHHTTSS GGG B  EE  EETTEE  EE EEEETTTEEEE S   SSB    HHHHHHHHH SHHHHHHSB    SS SS    BSSS:    
ExpBur          :bebbbbbbbbbbbbbebbeeebbbebeeebebeeeeeebbbbbbbebbbbbebeeeeeeeeeeeeebebbeebbbbeeeeeeeebebeebebebebbeee:    

queryA      4796:NVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAG:4895
                :****************************************************************************************************:
6xez_A_1     404:NVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAG: 503
SecStr          :S   B B   EE HHHHHHHHHTT S TT S     B   B TBHHHHHHHGGGG       SSHHHHHHHHHHHHT S       SSS   S   S   :    
ExpBur          :eeeeeebeeeeebeebeebbeeeebeeeeeebebebebeebeeebbbebbbebebbbebbbbbbbbbbbbbbbbbbbeebeebbbebeebebeeeeeebb:    
Contact         :                                                                                            b   bb  

queryA      4896:FPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK:4995
                :****************************************************************************************************:
6xez_A_1     504:FPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK: 603
SecStr          :TTGGGT  HHHHHHHS HHHHHHHHHHHTSS    EE  EE    BSSS   EE    HHHHHHHHHHHHHHHHHHTT  SSSB  S  STTTTHHHHHH:    
ExpBur          :bbbeeeeebeebbeebeeeebeebbebbbebbbbbbbebebeeeeeeeeebebebebbbbbbbbbebbbbebbebbeeeeeebbbbeeeeeeebbeebbe:    
Contact         :                                       b               b         b       b            b b bb        

queryA      4996:TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTAN:5095
                :****************************************************************************************************:
6xez_A_1     604:TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTAN: 703
SecStr          :HH SS SS   B    TTTTTT  HHHHHHHHHHHTSS TTTS HHHHHHHHHHHHHHHTS EEB SSSB    S   SSSSSHHHHHHHHHHHHHHHHH:    
ExpBur          :ebbeebeeeebbbbebeebebbbbbbbbbbbbbbbbebbeeebeeeeebbbbbbbbbbbbebbbbbeebbbebebbbbeebebeebbbbbbbbbbbbbbb:    
Contact         :                                                                              bbbb b b              

queryA      5096:VNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTET:5195
                :****************************************************************************************************:
6xez_A_1     704:VNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTET: 803
SecStr          :HHHHHHS SSS   SSHHHHHHHHHHHHHS  S  HHHHHHHHHHHHHH    EETTEE B   HHHHHHTSS  HHHHHHHHHHHT S   TTS     :    
ExpBur          :bbbbbebbbeebeeeebbebbbebbebbbeeeeeeeebbeebbebbeebbbbbbebeebbbbbbeeebeeebbbbbebbbbbbbbbbbbbbeeeebbebe:    

queryA      5196:DLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMY:5295
                :****************************************************************************************************:
6xez_A_1     804:DLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMY: 903
SecStr          : STT  S BTTBEEEEEEETTEEEEEEE  HHHHHHHHHEESSGGGSSSSSHHHHHHHHHHHHGGGGG SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHS:    
ExpBur          :eeeebbeebeeeebbebeeeeeebbbbbbebbebbbbbbbbeeeeebebeebbeebbebbbebbbbeebeeebebebbebbbebbeebbeeeeeeeeeee:    
Contact         :                                                     b                                              

queryA      5296:SVMLTNDNTSRYWEPEFYEAMYTPHT:5321
                :**************************:
6xez_A_1     904:SVMLTNDNTSRYWEPEFYEAMYTPHT: 929
SecStr          :S   STTGGGGTSSHHHHHGGG S  :    
ExpBur          :eeeeeeeebeebeeeeebeebbeeee:    
Contact         :          bb        b                                                                               


Input Residue Numbers for Focused Sites

ex) 2,15,123