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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(R1AB_SARS2) | A 1 (B) | polymer(polypeptide(L)) [591 aa] | ORF1ab :K0BWD0_9BETC | |
2 | b | F 1 (B) | non-polymer(SO4) | SULFATE ION | 5608P 5609G 5610T 5612K 5767R (identity: 100.0 %/71.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5wwp_A_1 identity=71.5% |
queryA 5325:AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGS:5424 :*** ** * ******** ***************** * ** **** ********* * *** ******** * * * ******** ******* * **: 5wwp_A_1 3:AVGSCVVCHSQTSLRCGTCIRRPFLCCKCCYDHVIATPHKMVLSVSPYVCNAPGCGVSDVTKLYLGGMSYFCVDHRPVCSFPLCANGLVFGLYKNMCTGS: 102 SecStr : SEE SSS EESEEESSSTT EE HHHHHHHHHTSS EESSSB STT TTT EEETTEEE TTT SS EESEETTEE S TTS : ExpBur :eebebebbebebbbbbbebeeebebbbebbebbbeebebeebbbeeebebebeeeeeebbeebebbeeebbbeeeeeeebeebbeeeebebeeeeebeee: queryA 5425:DNVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYRVTKNSKVQIGEYTF:5524 : ** ****** *** **** ** ********* **** * ** *** * * * * ** ** ************ *** *** *: 5wwp_A_1 103:PSIVEFNRLATCDWTESGDYTLANTTTEPLKLFAAETLRATEEASKQSYAIATIKEIVGERQLLLVWEAGKSKPPLNRNYVFTGYXXXXXXKVQLGEYIF: 202 SecStr :TTHHHHHHHHH TTBHHHHHHHHHS HHHHHHHHHHHHHHHHHHHTTS EEEEEEEETTEEEEEE TTS SSTT EEE ------ EEEE: ExpBur :ebbeebbebbebebeebebbebbbebeeebbbbbbbbbebeebeebeebbebebeeeeeeeebbbebeeeeeebebeeebbbbbe------eeebebbbb: queryA 5525:EKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP:5624 :* ** *** * ***** *** ****** * * *** * ** ** ******* ** * *** ** * ** * **************** ***: 5wwp_A_1 203:ERIDYSDAVSYKSSTTYKLTVGDIFVLTSHSVATLTAPTIVNQERYVKITGLYPTITVPEEFASHVANFQKSGYSKYVTVQGPPGTGKSHFAIGLAIYYP: 302 SecStr :EETTSSSSEEEEES SS EEEE S SS B SS S S TTGGGGHHHHHHTTSBSEEEEE TTS HHHHHHHHHHHST: ExpBur :eeeeeeebbebebbeeeebeeebebebbeeebeebebebbeeeeeeeebeebeeeeebeeebeebbeebeebbebbbbbbbbbbbbebebbbbbbbebbe: Contact : bbb b queryA 5625:SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIG:5724 : ** ***************** *** * ******** ***** * **** * ** * * ****** *** * ** ** ****** *** *** ** *: 5wwp_A_1 303:TARVVYTACSHAAVDALCEKAFKYLNIAKCSRIIPAKARVECYDRFKVNETNSQYLFSTINALPETSADILVVDEVSMCTNYDLSIINARIKAKHIVYVG: 402 SecStr :TS EEEEESSHHHHHHHHHHHHTTS GGGEEEE SS S SSEES TTSSEEEEETTT SEEEEEEEEESGGG HHHHHHHHHHEEEEEEEEEE: ExpBur :ebbbbbbbeeeebbbebbeebeeebeeeebbbbbeeeeeeebbeebeeeeeebebbbbbbebbeebebebbbbbbbbbbbbbbbbbbbeebebebbbbbb: queryA 5725:DPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFL:5824 :************* ****** **** *** *** ** * *** *** ******* *** * * * **** *** *** ******** * * : 5wwp_A_1 403:DPAQLPAPRTLLTRGTLEPENFNSVTRLMCNLGPDIFLSMCYRCPKEIVSTVSALVYNNKLLAKKELSGQCFKILYKGNVTHDASSAINRPQLTFVKNFI: 502 SecStr : TTS TT B GGGSSHHHHHHHHT SEE EE SS HHHHHHHHTTTSTT EESS S EEEE B SSSS B HHHHHHHHHHH: ExpBur :bbbbbebebebeeeeebeeebbbbbbeebeeeeeebbbeebebbbebbbebbbeeebeeebeeeeeeeeebbbbebebeeeeeeeebbbeebbebbeebb: Contact : b queryA 5825:TRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSL:5914 :* **** ************** *** ************ **** ** *** * ********** **** * * * ** *: 5wwp_A_1 503:TANPAWSKAVFISPYNSQNAVSRSMLGLTTQTVDSSQGSEYQYVIFCQTADTAHANNINRFNVAITRAQKGILCVMTSQALFESLEFTEL: 592 SecStr :HT SGGGG EEE SSHHHHHHHHHHT EE SGGGSS EEEEEEE TT HHHH HHHHHHHHTTEEEEEEEE S HHHHTTS SEE : ExpBur :eeeeebeebbbbbbbebbbebbeeebebebeebeebbeeebebbbbbbbeeeeebeeebbbbbbbbbbbebbbbbbbbeebbeebebeeb: |