Protein Model on 5s71_B_4_F_5 (TEMPLATE: 5s71 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(R1AB_SARS2) B 4 (B) polymer(polypeptide(L)) [348 aa] Uridylate-specific endoribonuclease :R1AB_SARS2
2 b F 5 (B) non-polymer(WUV) 5'-thiothymidine 6718E (identity: 100.0 %/100.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5s71_B_4 identity=100.0%
queryA      6453:SLENVAFNVVNKGHFDGQQGEVPVSIINNTVYTKVDGVDVELFENKTTLPVNVAFELWAKRNIKPVPEVKILNNLGVDIAANTVIWDYKRDAPAHISTIG:6552
                :****************************************************************************************************:
5s71_B_4       4:SLENVAFNVVNKGHFDGQQGEVPVSIINNTVYTKVDGVDVELFENKTTLPVNVAFELWAKRNIKPVPEVKILNNLGVDIAANTVIWDYKRDAPAHISTIG: 103
SecStr          : HHHHHHHHHHHSS         EEEETTEEEEEETTEEEEEEE  SSS HHHHHHHHHTB  S B  HHHHHHTT  EESSSB EETTTTEESSS EES:    
ExpBur          :eeebbbebbeeeebbeeeebebebeeeeebbebeeeeeeeebbebebeeebebbbbbbbbbbeebbbbbbbbeebebebbbebbbbbeeeebbbbeebbe:    

queryA      6553:VCSMTDIAKKPTETICAPLTVFFDGRVDGQVDLFRNARNGVLITEGSVKGLQPSVGPKQASLNGVTLIGEAVKTQFNYYKKVDGVVQQLPETYFTQSRNL:6652
                :****************************************************************************************************:
5s71_B_4     104:VCSMTDIAKKPTETICAPLTVFFDGRVDGQVDLFRNARNGVLITEGSVKGLQPSVGPKQASLNGVTLIGEAVKTQFNYYKKVDGVVQQLPETYFTQSRNL: 203
SecStr          :S TTTEEESSTTSGGGTTS EEEETTSTTHHHHHHH SSEEEEESS BTTB  EE  S EEETTEEE  SSS    EEEEEETTEE      B      S:    
ExpBur          :bbeebeebeebeeeebeeebbbbbebeeebeeebeebebbbbbbeeebeebeebebbebbbeeeeeeeeeeeebebbbbbbeeeeeeebeeeebbbbbeb:    

queryA      6653:QEFKPRSQMEIDFLELAMDEFIERYKLEGYAFEHIVYGDFSHSQLGGLHLLIGLAKRFKESPFELEDFIPMDSTVKNYFITDAQTGSSKCVCSVIDLLLD:6752
                :****************************************************************************************************:
5s71_B_4     204:QEFKPRSQMEIDFLELAMDEFIERYKLEGYAFEHIVYGDFSHSQLGGLHLLIGLAKRFKESPFELEDFIPMDSTVKNYFITDAQTGSSKCVCSVIDLLLD: 303
SecStr          :TT    SHHHHHHHHS HHHHHHHTT TTS HHHHTT B SSSB B   BHHHHHHHHHHS EEEE SS S  SEEEEEEEETTT  EEEEEEEE   HH:    
ExpBur          :eebeeebebbebbbebeeeebbeeeebeeebbeebbbbebeeeebbbbbbbbbbbbeeeebebeeeeeeeebebbbebebebeeeebebeebbbbbbbbe:    
Contact         :                                                                 b                                  

queryA      6753:DFVEIIKSQDLSVVSKVVKVTIDYTEISFMLWCKDGHVETFYPKLQ:6798
                :**********************************************:
5s71_B_4     304:DFVEIIKSQDLSVVSKVVKVTIDYTEISFMLWCKDGHVETFYPKLQ: 349
SecStr          :HHHHHHHTS   SSEEEEEEEETTEEEEEEEEEETTEEEEEEE   :    
ExpBur          :ebbebbeeeebeeeeeebebebbbeebbbbbebeeeebebbebeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123