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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(R1AB_SARS2) | A 1 (B) | polymer(polypeptide(L)) [585 aa] | Helicase :R1AB_SARS2 | |
2 | b | C 1 (B) | non-polymer(S7J) | 2-(trifluoromethyl)pyrimidine-5-carboxamide | 5798M 5819V 5822E 5823F 5826R 5914L 5915E 5917P (identity: 100.0 %/98.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5rm3_A_1 identity=98.8% |
queryA 5326:VGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSD:5425 :****************************************************************************************************: 5rm3_A_1 2:VGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSD: 101 SecStr : EE TTT EESEEESSSTT EE HHHHHHHHHHSS EESSSEES STT GGG EEETTEEE TTT SS EESB SSSB S TTS S: ExpBur :eeebbeeebebbbebbebeeebebbbbbbeebbeebebeebbbeeebebebeebebeebeebbbbeeebebeeeeeeeeeebbeeeebebeeeeeeebee: queryA 5426:NVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYRVTKNSKVQIGEYTFE:5525 :****************************************************************************************************: 5rm3_A_1 102:NVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYRVTKNSKVQIGEYTFE: 201 SecStr : HHHHHHHH S BHHHHHHHHHS HHHHHHHHHHHHHHHHHHHTTS EEEEE SSSEEEEEE TTS STTS EEEEEE SSSEEEEEEEEEE: ExpBur :ebeebbebbebebbebebbeebbebeeebbbbbbbbbebebbeeeeebbebebeeeeeeeebebebeeeeeebebbeebebbbbbeeeeeeeebeebebe: queryA 5526:KGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPS:5625 :** **********************************************************************************************: 5rm3_A_1 202:KGXXXXAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPS: 301 SecStr :E ---- EEEEESS TT EEB S SS B SS S SS TTTGGGHHHHHHHHHBSEEEEE TTS HHHHHHHHHHHSTT: ExpBur :ee----ebebeeeeeeebeeebbbebeeeebeebebebbbeeeeeeeeeebeeeeeeeeebeebeeebeebbebebbbbbbbbebebeebbbbbbebbee: queryA 5626:ARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGD:5725 :*********************************** **************************************************************: 5rm3_A_1 302:ARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPAXXXVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGD: 401 SecStr : EEEE SSHHHHHHHHHHHHTTS GGGEEE --- SSEES TTSSEEE GGG SEEEEEEEE SGGG HHHHHHHHHHEEEEEEEEEE : ExpBur :bbbbbbbeeeebbbebbeebeebbeeeebbbbeee---eebbeebeeeeeebbbbbbbbebbbebebebbbbbebbebebbbbbbbbeebebebbbbbbb: queryA 5726:PAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLT:5825 :****************************************************************************************************: 5rm3_A_1 402:PAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLT: 501 SecStr :TTS TT BS GGGT HHHHHHHHT SEE EESSS HHHHHHHHHHHSTT EESS S EEEEE EE SS EE HHHHHHHHHHHH: ExpBur :bbbbbbebebeeeeebebebbbbbbebbeeeeeebebeebebbbbbbbebbbebbbeeebeeeeeeeeebbbbeeeeeeeeeeebbbbeebbbbbeebbe: Contact : b b bb queryA 5826:RNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIP:5917 :********************************************************************************************: 5rm3_A_1 502:RNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIP: 593 SecStr :H GGGGG EEEES HHHHHHHHHHH EEEHHHHTT EEEEEEE SHHHH HHHHHHHHTTEEEEEEEEES HHHHHH SEE : ExpBur :eeeebeebbbbbbbbbbbebbeeebebeeeebeebbeeeeebbbbbbbbeeeebbbebbbbbbbbbbeebbbbbbbbeebbeebebeeeeee: Contact :b bb b |